updated panels to last dev, added panels_extra_styles

sites/all/modules/contrib/panels/panels/KNOWN_ISSUES.txt

@@ -88,4 +88,4 @@ Known Issue http://drupal.org/node/207859
     secure pages doesn't know about. When trying to make non-secure ajax calls
     from a secure page, the browser denies the call.
   Solution:
-    The solution is to simply add panels/* to your Secure Pages configuration.
+    The solution is to simply add panels/* to your Secure Pages configuration.

sites/all/modules/contrib/panels/panels/README.txt

@@ -1,3 +1,3 @@
 Welcome to Panels 3
 
-Documentation is available at https://www.drupal.org/node/496278
+Documentation is available at https://www.drupal.org/node/496278

sites/all/modules/contrib/panels/panels/css/panels-dashboard.css

@@ -1,4 +1,3 @@
-
 .dashboard-entry .dashboard-link {
   font-size: 120%;
   font-weight: bold;

sites/all/modules/contrib/panels/panels/css/panels.css

@@ -1,4 +1,3 @@
-
 div.panel-pane div.admin-links {
   font-size: xx-small;
   margin-right: 1em;

sites/all/modules/contrib/panels/panels/css/panels_admin.css

@@ -1,4 +1,3 @@
-
 .layout-link {
   float: left;
   padding: 1em;
@@ -141,12 +140,12 @@ table .argument-operation input {
 }
 
 tr.changed td {
-  background-color: #FFFFDD !important;
+  background-color: #ffffdd !important;
 }
 
 tr.changed td span.star {
   font-weight: bold;
-  color: #E09010;
+  color: #e09010;
 }
 
 td select {

sites/all/modules/contrib/panels/panels/css/panels_dnd.css

@@ -1,4 +1,3 @@
-
 #panels-dnd-main {
   margin: 0.5em 0;
 }
@@ -42,7 +41,7 @@ div.panels-set-title-hide .panels-set-title {
 }
 
 /* Add Icon */
-#panels-dnd-main div.panel-region .pane-add-link  {
+#panels-dnd-main div.panel-region .pane-add-link {
 }
 #panels-dnd-main div.panel-region .pane-add-link img {
   display: none;
@@ -127,24 +126,24 @@ div.panels-set-title-hide .panel-pane-is-title {
 }
 
 .panel-portlet .changed div.grab-title {
-  background-color: #FFFFDD !important;
-  border-bottom: 1px solid #3D9CD7 !important;
+  background-color: #ffffdd !important;
+  border-bottom: 1px solid #3d9cd7 !important;
   color: black !important;
 }
 
 .panel-portlet .changed.hidden-pane div.grab-title {
-  background-color: #B4B488 !important;
-  border-bottom: 1px solid #3D9CD7 !important;
+  background-color: #b4b488 !important;
+  border-bottom: 1px solid #3d9cd7 !important;
 }
 
 .panel-portlet .changed div.grab-title span.star {
   font-weight: bold;
-  color: #E09010;
+  color: #e09010;
 }
 
 .panel-portlet .grabber:hover {
   color: #fff;
-  background-color: #2F78A5;
+  background-color: #2f78a5;
 }
 
 .panel-portlet.hidden-pane .grab-title:hover {
@@ -175,7 +174,8 @@ div.panels-set-title-hide .panel-pane-is-title {
   margin: 0;
 }
 
-.panel-portlet .buttons input, .panel-portlet .buttons button {
+.panel-portlet .buttons input,
+.panel-portlet .buttons button {
   margin: 0;
   padding: 0;
   display: inline;
@@ -186,7 +186,7 @@ div.panels-set-title-hide .panel-pane-is-title {
 }
 
 .panel-portlet .pane-title {
-  font-size:110%;
+  font-size: 110%;
   cursor: pointer;
 }
 
@@ -315,7 +315,7 @@ a.close img {
   padding-left: 1em;
   padding-bottom: 1em;
   margin-bottom: 1em;
-  background-color: #EEEEEE;
+  background-color: #eeeeee;
 }
 
 .panels-section-columns {
@@ -354,7 +354,7 @@ a.close img {
 
 .panels-section-column-categories .inside {
   padding: 0;
- }
+}
 
 .panels-section-column-categories .content-type-button {
   padding-left: 10px;
@@ -431,7 +431,7 @@ a.close img {
   float: none;
 }
 
-.panels-modal-content .modal-form .no-float label  {
+.panels-modal-content .modal-form .no-float label {
   width: auto;
 }
 
@@ -502,7 +502,6 @@ html.js div.panels-display-links div.ctools-dropdown-container ul li a {
 /* @group CTools Dropdown */
 #panels-dnd-main .ctools-dropdown a.ctools-dropdown-text-link,
 html.js div.panels-display-links a.ctools-dropdown-text-link {
-
   background: url('../images/arrow-down-light.png') 0 3px no-repeat!important;
   padding-left: 12px;
 }
@@ -522,7 +521,6 @@ html.js div.panels-display-links div.ctools-dropdown-container {
 
 html.js #panels-dnd-main div.ctools-dropdown div.ctools-dropdown-container ul li,
 html.js div.panels-display-links div.ctools-dropdown-container ul li {
-
   text-decoration: none;
   padding: 0;
   margin: 0;
@@ -565,7 +563,7 @@ html.js #panels-dnd-main div.ctools-dropdown div.ctools-dropdown-container ul li
 html.js div.panels-display-links div.ctools-dropdown-container ul li .panels-sub-menu ul li a,
 html.js #panels-dnd-main div.ctools-dropdown div.ctools-dropdown-container ul li .panels-sub-menu span.panels-text,
 html.js div.panels-display-links div.ctools-dropdown-container ul li .panels-sub-menu span.panels-text {
-  width:auto;
+  width: auto;
   padding: 0 20px;
 }
 
@@ -682,4 +680,3 @@ div.ctools-modal-content {
   top: -2em;
   margin-bottom: -2em;
 }
-

sites/all/modules/contrib/panels/panels/css/panels_page.css

@@ -1,4 +1,3 @@
-
 div.panels-page-type-container {
   clear: left;
 }

sites/all/modules/contrib/panels/panels/i18n_panels/i18n_panels.i18n.inc

@@ -1,7 +1,7 @@
 <?php
 /**
  * @file
- * Internationalization (i18n) hooks
+ * Internationalization (i18n) hooks.
  */
 
 /**

sites/all/modules/contrib/panels/panels/i18n_panels/i18n_panels.info

@@ -7,9 +7,9 @@ dependencies[] = i18n_translation
 package = Multilingual - Internationalization
 core = 7.x
 
-; Information added by Drupal.org packaging script on 2016-10-16
-version = "7.x-3.8"
+; Information added by Drupal.org packaging script on 2017-02-06
+version = "7.x-3.9"
 core = "7.x"
 project = "panels"
-datestamp = "1476582295"
+datestamp = "1486394388"
 

sites/all/modules/contrib/panels/panels/i18n_panels/i18n_panels.module

@@ -206,6 +206,7 @@ function i18n_panels_panels_delete_display($did) {
  *
  * This function must not rely on the passed $renderer parameter. The parameter
  * could be empty because this function is reused in i18n_ctools_render_alter().
+ *
  * @todo Check if a drupal_alter() in panels_display::get_title() is applicable.
  *
  * @see i18n_ctools_render_alter()
@@ -234,6 +235,7 @@ function i18n_panels_panels_pre_render(&$display, $renderer) {
  *
  * Under some circumstances the title of the panel page is set before
  * hook_panels_pre_render() is fired. Such cases can be handled with this hook.
+ *
  * @todo Check if a drupal_alter() in panels_display::get_title() is applicable.
  */
 function i18n_ctools_render_alter(&$info, $page, $context) {
@@ -250,7 +252,6 @@ function i18n_ctools_render_alter(&$info, $page, $context) {
  * Implements hook_ctools_plugin_post_alter().
  *
  * Register some translatable configuration settings for plugins.
- *
  */
 function i18n_panels_ctools_plugin_post_alter(&$plugin, $plugin_type_info) {
   if ($plugin_type_info['type'] == 'content_types') {
@@ -322,7 +323,7 @@ function i18n_panels_i18n_string_list($group) {
         if (empty($pane->uuid)) {
           // Fetch exported uuid and validate it.
           $uuid = str_replace('new-', '', $pane->pid);
-          if (!panels_uuid_is_valid($uuid)) {
+          if (!ctools_uuid_is_valid($uuid)) {
             drupal_set_message(t('The pane %pane has no uuid, please resave or re-export it.', array('%pane' => $pane->pid)), 'warning');
             continue;
           }
@@ -366,7 +367,7 @@ function _18n_panels_is_exported_panels_display($display) {
  *
  * @todo I bet there are better ways to solve this mess.
  *
- * @param boolean $reset
+ * @param bool $reset
  *   Reset the static cache.
  *
  * @return array

sites/all/modules/contrib/panels/panels/includes/callbacks.inc

@@ -1,6 +1,6 @@
 <?php
 /**
- * @file callbacks.inc
+ * @file Callbacks.inc
  * Minor menu callbacks for Panels helpers.
  */
 
@@ -46,7 +46,7 @@ function panels_panels_dashboard_blocks(&$vars) {
     'description' => t('Custom layouts can add more, site-specific layouts that you can use in your panels.'),
   );
 
-   // Load all mini panels and their displays.
+  // Load all mini panels and their displays.
   ctools_include('export');
   $items = ctools_export_crud_load_all('panels_layout');
   $count = 0;
@@ -97,7 +97,7 @@ function template_preprocess_panels_dashboard(&$vars) {
     $function($vars);
   }
 
-  // Add in any default links for modules that are not active
+  // Add in any default links for modules that are not active.
   panels_dashboard_final_blocks($vars);
 
   // If page manager module is enabled, add a very low eight block to
@@ -138,7 +138,7 @@ function template_preprocess_panels_dashboard(&$vars) {
     'class' => 'dashboard-create',
   );
 
-  // Turn the links into a block
+  // Turn the links into a block.
   foreach ($vars['links'] as $link) {
     $vars['blocks']['links']['content'] .= theme('panels_dashboard_link', array('link' => $link));
   }
@@ -148,7 +148,7 @@ function template_preprocess_panels_dashboard(&$vars) {
   $vars['left'] = '';
   $vars['right'] = '';
 
-  // Render all the blocks
+  // Render all the blocks.
   foreach ($vars['blocks'] as $block) {
     $section = !empty($block['section']) ? $block['section'] : 'left';
     $vars[$section] .= theme('panels_dashboard_block', array('block' => $block));
@@ -202,4 +202,3 @@ function panels_admin_panel_context_page() {
   ctools_include('common', 'panels');
   return drupal_get_form('panels_common_settings', 'panels_page');
 }
-

sites/all/modules/contrib/panels/panels/includes/common.inc

@@ -39,12 +39,11 @@
  *
  * @see panels_edit_layout()
  * @see _panels_edit_layout()
- *
  */
 class panels_allowed_layouts {
 
   /**
-   *  Specifies whether newly-added layouts (as in, new .inc files) should be automatically
+   * Specifies whether newly-added layouts (as in, new .inc files) should be automatically
    *  allowed (TRUE) or disallowed (FALSE) for $this. Defaults to TRUE, which is more
    *  permissive but less of an administrative hassle if/when you add new layouts. Note
    *  that this parameter will be derived from $allowed_layouts if a value is passed in.
@@ -52,19 +51,20 @@ class panels_allowed_layouts {
   var $allow_new = TRUE;
 
   /**
-   *  Optional member. If provided, the Panels API will generate a drupal variable using
+   * Optional member. If provided, the Panels API will generate a drupal variable using
    *  variable_set($module_name . 'allowed_layouts', serialize($this)), thereby handling the
    *  storage of this object entirely within the Panels API. This object will be
    *  called and rebuilt by panels_edit_layout() if the same $module_name string is passed in
    *  for the $allowed_types parameter. \n
    *  This is primarily intended for convenience - client modules doing heavy-duty implementations
    *  of the Panels API will probably want to create their own storage method.
+   *
    * @see panels_edit_layout()
    */
   var $module_name = NULL;
 
   /**
-   *  An associative array of all available layouts, keyed by layout name (as defined
+   * An associative array of all available layouts, keyed by layout name (as defined
    *  in the corresponding layout plugin definition), with value = 1 if the layout is
    *  allowed, and value = 0 if the layout is not allowed.
    *  Calling array_filter(panels_allowed_layouts::$allowed_layout_settings) will return an associative array
@@ -82,15 +82,14 @@ class panels_allowed_layouts {
 
   /**
    * Constructor function; loads the $allowed_layout_settings array with initial values according
-   * to $start_allowed
+   * to $start_allowed.
    *
    * @param bool $start_allowed
-   *  $start_allowed determines whether all available layouts will be marked
-   *  as allowed or not allowed on the initial call to panels_allowed_layouts::set_allowed()
-   *
+   *   $start_allowed determines whether all available layouts will be marked
+   *   as allowed or not allowed on the initial call to panels_allowed_layouts::set_allowed()
    */
   function __construct($start_allowed = TRUE) {
-    // TODO would be nice if there was a way to just fetch the names easily
+    // TODO would be nice if there was a way to just fetch the names easily.
     foreach ($this->list_layouts() as $layout_name) {
       $this->allowed_layout_settings[$layout_name] = $start_allowed ? 1 : 0;
     }
@@ -121,6 +120,7 @@ class panels_allowed_layouts {
    *      drupal_goto('</path/to/desired/redirect>');
    *    }
    *  }
+   *
    * @endcode \n
    *
    * If $allowed_layouts->form_state == 'failed-validate' || 'render', then you'll need to return
@@ -135,8 +135,8 @@ class panels_allowed_layouts {
    * you to control where the user ends up next.
    *
    * @param string $title
-   *  Used to set the title of the allowed layouts form. If no value is given, defaults to
-   *  'Panels: Allowed Layouts'.
+   *   Used to set the title of the allowed layouts form. If no value is given, defaults to
+   *   'Panels: Allowed Layouts'.
    *
    * @return mixed $result
    *  - On the first passthrough when the form is being rendered, $result is the form's structured
@@ -147,11 +147,11 @@ class panels_allowed_layouts {
   function set_allowed($title = 'Panels: Allowed Layouts') {
     $this->sync_with_available();
     $form_id = 'panels_common_set_allowed_layouts';
-    // TODO switch to drupal_build_form(); need to pass by ref
+    // TODO switch to drupal_build_form(); need to pass by ref.
     $form = drupal_retrieve_form($form_id, $this, $title);
 
     if ($result = drupal_process_form($form_id, $form)) {
-      // successful submit
+      // Successful submit.
       $this->form_state = 'submit';
       return $result;
     }
@@ -192,11 +192,10 @@ class panels_allowed_layouts {
    * If you don't serialize the second parameter of variable_get() and the variable name you provide
    * can't be found, an E_STRICT warning will be generated for trying to unserialize an entity
    * that has not been serialized.
-   *
    */
   function save() {
     if (!is_null($this->module_name)) {
-      variable_set($this->module_name . '_allowed_layouts', serialize($this));
+      variable_set($this->module_name . "_allowed_layouts", serialize($this));
     }
   }
 
@@ -217,6 +216,7 @@ class panels_allowed_layouts {
     }
     return $layouts;
   }
+
 }
 
 /**
@@ -272,11 +272,7 @@ function panels_common_settings($form, &$form_state, $module_name = 'panels_comm
     // each type its own checkboxes set unless it's 'single' in which
     // case it can go into our fake other set.
     $available_content_types = ctools_content_get_all_types();
-    $allowed_content_types = db_select('panels_allowed_types', 'pat')
-      ->fields('pat', array('type', 'allowed'))
-      ->condition('module', $module_name)
-      ->execute()
-      ->fetchAllKeyed();
+    $allowed_content_types = variable_get($module_name . '_allowed_types', array());
 
     foreach ($available_content_types as $id => $types) {
       foreach ($types as $type => $info) {
@@ -296,7 +292,7 @@ function panels_common_settings($form, &$form_state, $module_name = 'panels_comm
       '#tree' => TRUE,
     );
 
-    // cheat a bit
+    // Cheat a bit.
     $content_types['other'] = array('title' => t('Other'), 'weight' => 10);
     foreach ($content_types as $id => $info) {
       if (isset($allowed[$id])) {
@@ -342,14 +338,14 @@ function panels_common_settings($form, &$form_state, $module_name = 'panels_comm
 }
 
 /**
- * Submit hook for panels_common_settings
+ * Submit hook for panels_common_settings.
  */
 function panels_common_settings_validate($form, &$form_state) {
   panels_common_allowed_layouts_form_validate($form, $form_state);
 }
 
 /**
- * Submit hook for panels_common_settings
+ * Submit hook for panels_common_settings.
  */
 function panels_common_settings_submit($form, &$form_state) {
   panels_common_allowed_layouts_form_submit($form, $form_state);
@@ -358,21 +354,21 @@ function panels_common_settings_submit($form, &$form_state) {
   if (!$form_state['skip']) {
     // Merge the broken apart array neatly back together.
     $allowed_content_types = array();
-    $content_types = $form_state['values']['allowed'];
-    foreach ($content_types as $content_type) {
-      $allowed_content_types = array_merge($allowed_content_types, $form_state['values']['content_types'][$content_type]['options']);
-      foreach ($allowed_content_types as $type => $allowed) {
-        $allowed = empty($allowed) ? 0 : 1;
-        db_merge('panels_allowed_types')
-          ->key(array('module' => $module_name, 'type' => $type))
-          ->fields(array(
-            'module' => $module_name,
-            'type' => $type,
-            'allowed' => $allowed,
-          ))
-          ->execute();
+    foreach ($form_state['values']['allowed'] as $allowed) {
+      $values = $form_state['values']['content_types'][$allowed]['options'];
+      // If new content of the type is not added, storing a lisy of disabled
+      // content is not needed.
+      if (!$form_state['values']['panels_common_default'][$allowed]) {
+        $values = array_filter($values);
       }
+      $allowed_content_types = array_merge($allowed_content_types, $values);
     }
+    // Values from checkboxes are the same string as they key, but we only need
+    // to store the boolean value.
+    foreach ($allowed_content_types as &$value) {
+      $value = (bool) $value;
+    }
+    variable_set($module_name . '_allowed_types', $allowed_content_types);
   }
   drupal_set_message(t('Your changes have been saved.'));
 }
@@ -381,14 +377,9 @@ function panels_common_settings_submit($form, &$form_state) {
  * Based upon the settings, get the allowed types for this node.
  */
 function panels_common_get_allowed_types($module, $contexts = array(), $has_content = FALSE, $default_defaults = array(), $default_allowed_types = array()) {
-  // Get a list of all types that are available
+  // Get a list of all types that are available.
   $default_types = variable_get($module . '_default', $default_defaults);
-  $allowed_types = db_select('panels_allowed_types', 'pat')
-    ->fields('pat', array('type', 'allowed'))
-    ->condition('module', $module)
-    ->execute()
-    ->fetchAllKeyed();
-  $allowed_types = !empty($allowed_types) ? $allowed_types : $default_allowed_types;
+  $allowed_types = variable_get($module . '_allowed_types', $default_allowed_types);
 
   // By default, if they haven't gone and done the initial setup here,
   // let all 'other' types (which will be all types) be available.
@@ -420,8 +411,8 @@ function panels_common_get_allowed_types($module, $contexts = array(), $has_cont
  * @ingroup forms
  *
  * @param array $allowed_layouts
- *  The set of allowed layouts that should be used as the default values
- *  for this form. If none is provided, then by default no layouts will be restricted.
+ *   The set of allowed layouts that should be used as the default values
+ *   for this form. If none is provided, then by default no layouts will be restricted.
  */
 function panels_common_allowed_layouts_form(&$form, &$form_state, $module_name) {
   // Fetch our allowed layouts from variables.
@@ -434,6 +425,7 @@ function panels_common_allowed_layouts_form(&$form, &$form_state, $module_name)
 
   $form_state['allowed_layouts'] = &$allowed_layouts;
 
+  ctools_add_js('panels-base', 'panels');
   ctools_add_js('layout', 'panels');
 
   $form['layout_selection'] = array(
@@ -473,19 +465,19 @@ function panels_common_allowed_layouts_form_submit($form, &$form_state) {
  * Get the allowed layout object for the given module.
  */
 function panels_common_get_allowed_layout_object($module_name) {
-  $allowed_layouts = unserialize(variable_get($module_name . '_allowed_layouts', serialize('')));
+  $allowed_layouts = unserialize(variable_get($module_name . "_allowed_layouts", serialize('')));
 
-  // if no parameter was provided, or the variable_get failed
+  // If no parameter was provided, or the variable_get failed.
   if (!$allowed_layouts) {
-    // still no dice. simply creates a dummy version where all layouts
+    // Still no dice. simply creates a dummy version where all layouts
     // are allowed.
     $allowed_layouts = new panels_allowed_layouts();
     $allowed_layouts->allow_new = TRUE;
     $allowed_layouts->module_name = $module_name;
   }
 
-  // sanitize allowed layout listing; this is redundant if the
-  // $allowed_layouts param was null, but the data is cached anyway
+  // Sanitize allowed layout listing; this is redundant if the
+  // $allowed_layouts param was null, but the data is cached anyway.
   $allowed_layouts->sync_with_available();
 
   return $allowed_layouts;
@@ -500,7 +492,7 @@ function panels_common_get_allowed_layouts($module_name) {
   if (empty($module_name)) {
     return $available_layouts;
   }
-  else if (is_object($module_name)) {
+  elseif (is_object($module_name)) {
     $allowed_layouts = $module_name;
   }
   else {
@@ -515,7 +507,7 @@ function panels_common_get_allowed_layouts($module_name) {
     }
   }
 
-  // Sort
+  // Sort.
   $layouts = array();
 
   asort($order);
@@ -603,7 +595,6 @@ function panels_common_print_layout_links($layouts, $base_path, $link_options =
   // We're doing these dependencies completely manualy, which is unusual, but
   // the process code only supports doing them in a form.
   // @todo modify dependent.inc to make this easier.
-
   $dependencies = array();
   foreach ($options as $category => $links) {
     $dependencies['panels-layout-category-' . $category] = array(

sites/all/modules/contrib/panels/panels/includes/display-edit.inc

@@ -1,6 +1,6 @@
 <?php
 
-/*
+/**
  * @file
  * Core Panels API include file containing various display-editing functions.
  * This includes all the basic editing forms (content, layout, layout settings)
@@ -40,7 +40,7 @@ function _panels_edit($display, $destination, $content_types, $title = FALSE) {
 }
 
 /**
- * Form definition for the panels display editor
+ * Form definition for the panels display editor.
  *
  * No validation function is necessary, as all 'validation' is handled
  * either in the lead-up to form rendering (through the selection of
@@ -48,6 +48,7 @@ function _panels_edit($display, $destination, $content_types, $title = FALSE) {
  * the ajax modals & content types.
  *
  * @ingroup forms
+ *
  * @see panels_edit_display_submit()
  */
 function panels_edit_display_form($form, &$form_state) {
@@ -157,7 +158,7 @@ function panels_edit_display_form_submit($form, &$form_state) {
       $display->panels[$region_id] = array();
       if ($panes) {
         $pids = explode(',', $panes);
-        // need to filter the array, b/c passing it in a hidden field can generate trash
+        // Need to filter the array, b/c passing it in a hidden field can generate trash.
         foreach (array_filter($pids) as $pid) {
           if ($old_content[$pid]) {
             $display->panels[$region_id][] = $pid;
@@ -221,7 +222,7 @@ function panels_edit_display_settings_form($form, &$form_state) {
   ctools_include('dependent');
 
   if ($form_state['display_title']) {
-    $form['display_title'] = array (
+    $form['display_title'] = array(
       '#tree' => TRUE,
     );
 
@@ -252,16 +253,15 @@ function panels_edit_display_settings_form($form, &$form_state) {
       // We have to create a manual fieldset because fieldsets do not support IDs.
       // Use 'hidden' instead of 'markup' so that the process will run.
       // Add js for collapsible fieldsets manually
-//      drupal_add_js('misc/form.js');
-//      drupal_add_js('misc/collapse.js');
-//      $form['display_title']['contexts_prefix'] = array(
-//        '#type' => 'hidden',
-//        '#id' => 'edit-display-substitutions',
-//        '#prefix' => '<div><fieldset id="edit-display-substitutions" class="collapsed collapsible"><legend>' . t('Substitutions') . '</legend><div class="fieldset-wrapper">',
-//        '#process' => array('ctools_dependent_process'),
-//        '#dependency' => array('edit-display-title-hide-title' => array(PANELS_TITLE_FIXED)),
-//      );
-
+      //      drupal_add_js('misc/form.js');
+      //      drupal_add_js('misc/collapse.js');
+      //      $form['display_title']['contexts_prefix'] = array(
+      //        '#type' => 'hidden',
+      //        '#id' => 'edit-display-substitutions',
+      //        '#prefix' => '<div><fieldset id="edit-display-substitutions" class="collapsed collapsible"><legend>' . t('Substitutions') . '</legend><div class="fieldset-wrapper">',
+      //        '#process' => array('ctools_dependent_process'),
+      //        '#dependency' => array('edit-display-title-hide-title' => array(PANELS_TITLE_FIXED)),
+      //      );
       $rows = array();
       foreach ($display->context as $context) {
         foreach (ctools_context_get_converters('%' . check_plain($context->keyword) . ':', $context) as $keyword => $title) {
@@ -279,17 +279,15 @@ function panels_edit_display_settings_form($form, &$form_state) {
         '#collapsible' => TRUE,
         '#collapsed' => TRUE,
         '#value' => theme('table', array('header' => $header, 'rows' => $rows)),
-//        '#process' => array('form_process_fieldset', 'ctools_dependent_process'),
-//        '#id' => 'edit-display-title-context',
-//        '#dependency' => array('edit-display-title-hide-title' => array(PANELS_TITLE_FIXED)),
+      // '#process' => array('form_process_fieldset', 'ctools_dependent_process'),      //        '#id' => 'edit-display-title-context',
+      //        '#dependency' => array('edit-display-title-hide-title' => array(PANELS_TITLE_FIXED)),
       );
-//      $form['display_title']['contexts_suffix'] = array(
-//        '#value' => '</div></fieldset></div>',
-//      );
+      // $form['display_title']['contexts_suffix'] = array(      //        '#value' => '</div></fieldset></div>',
+      //      );.
     }
   }
 
-  // TODO doc the ability to do this as part of the API
+  // TODO doc the ability to do this as part of the API.
   if (!empty($layout['settings form']) && function_exists($layout['settings form'])) {
     $form['layout_settings'] = $layout['settings form']($display, $layout, $display->layout_settings);
   }

sites/all/modules/contrib/panels/panels/includes/display-layout.inc

@@ -2,7 +2,6 @@
 
 /**
  * @file
- *
  * Handle the forms for changing a display's layout.
  */
 
@@ -33,7 +32,7 @@ function _panels_edit_layout($display, $finish, $destination, $allowed_layouts)
   if (empty($_POST) || empty($_POST['form_id']) || $_POST['form_id'] != 'panels_change_layout') {
     $output = drupal_build_form('panels_choose_layout', $form_state);
     if (!empty($form_state['executed'])) {
-      // upon submission go to next form.
+      // Upon submission go to next form.
       $change_form_state['layout'] = $_SESSION['layout'][$display->did] = $form_state['layout'];
       $change_form = TRUE;
     }
@@ -147,7 +146,6 @@ function panels_choose_layout($form, &$form_state) {
   $js['CTools']['dependent'] = $dependencies;
   drupal_add_js($js, 'setting');
 
-
   if (empty($form_state['no buttons'])) {
     $form['submit'] = array(
       '#type' => 'submit',
@@ -293,7 +291,7 @@ function panels_change_layout_submit($form, &$form_state) {
     foreach ($form_state['values']['panel']['pane'] as $region_id => $panes) {
       if ($panes) {
         $pids = explode(',', $panes);
-        // need to filter the array, b/c passing it in a hidden field can generate trash
+        // Need to filter the array, b/c passing it in a hidden field can generate trash.
         foreach (array_filter($pids) as $pid) {
           $switch[$pid] = $region_id;
         }

sites/all/modules/contrib/panels/panels/includes/legacy.inc

@@ -1,22 +1,32 @@
 <?php
 
+/**
+ * @file
+ * Legacy state manager for Panels.
+ */
+
 /**
  * Legacy state manager for Panels.
  *
  * Checks all possible ways (using discovery of patterned method names) in which
  * Panels may need to operate in legacy mode,
- * sets variables as appropriate, and returns an informational
- *
+ * sets variables as appropriate, and returns an informational.
  */
 class PanelsLegacyState {
   var $legacy = NULL;
 
+  /**
+   * Translation wrapper.
+   */
   function t() {
     $func = get_t();
     $args = func_get_args();
     return call_user_func_array($func, $args);
   }
 
+  /**
+   * Get Status.
+   */
   function getStatus() {
     if (!isset($this->legacy)) {
       $this->determineStatus();
@@ -29,7 +39,7 @@ class PanelsLegacyState {
    */
   function determineStatus() {
     $this->legacy = array();
-    foreach(get_class_methods($this) as $method) {
+    foreach (get_class_methods($this) as $method) {
       if (strtolower(substr($method, 0, 5)) == 'check') {
         $this->legacy[$method] = $this->$method();
       }
@@ -37,5 +47,4 @@ class PanelsLegacyState {
     $this->legacy = array_filter($this->legacy);
   }
 
-  // At this time there are no legacy checks.
 }

sites/all/modules/contrib/panels/panels/includes/page-wizard.inc

@@ -35,7 +35,7 @@ function panels_page_wizard_add_layout(&$form, &$form_state) {
     '#value' => '</fieldset>',
   );
 
-//  $form_state['cache'] = FALSE;
+  // $form_state['cache'] = FALSE;.
 }
 
 /**
@@ -52,7 +52,6 @@ function panels_page_wizard_add_content(&$form, &$form_state) {
 
   // Panels provides this caching mechanism to make it easy to use the
   // wizard to cache the display.
-
   $cache = panels_edit_cache_get('panels_page_wizard:' . $form_state['plugin']['name']);
 
   $form_state['renderer'] = panels_get_renderer_handler('editor', $cache->display);
@@ -68,14 +67,14 @@ function panels_page_wizard_add_content(&$form, &$form_state) {
 }
 
 /**
- * Add content form submit handler
+ * Add content form submit handler.
  *
  * This is not a proper submit handler, it is meant to be called by a form's
  * submit handler to handle submission.
  */
 function panels_page_wizard_add_content_submit(&$form, &$form_state) {
   // Call the normal panels edit form submit to make sure values are stored
-  // on the display
+  // on the display.
   panels_edit_display_form_submit($form, $form_state);
   $cache = &$form_state['wizard cache'];
 
@@ -83,4 +82,3 @@ function panels_page_wizard_add_content_submit(&$form, &$form_state) {
   $cache->display = &$form_state['display'];
   unset($cache->display_cache);
 }
-

sites/all/modules/contrib/panels/panels/includes/panels.pipelines.inc

@@ -11,7 +11,7 @@
 function panels_default_panels_renderer_pipeline() {
   $pipelines = array();
 
-  $pipeline = new stdClass;
+  $pipeline = new stdClass();
   $pipeline->disabled = FALSE; /* Edit this to true to make a default pipeline disabled initially */
   $pipeline->api_version = 1;
   $pipeline->name = 'standard';

sites/all/modules/contrib/panels/panels/includes/plugins.inc

@@ -2,7 +2,6 @@
 
 /**
  * @file
- *
  * Contains helper code for plugins and contexts.
  */
 
@@ -41,7 +40,7 @@ function panels_get_regions($layout, $display) {
  *   The cached content, or FALSE to indicate no cached content exists.
  */
 function panels_get_cached_content($display, $args, $context, $pane = NULL) {
-  // Never use cache on a POST
+  // Never use cache on a POST.
   if (!empty($_POST)) {
     return FALSE;
   }
@@ -59,7 +58,7 @@ function panels_get_cached_content($display, $args, $context, $pane = NULL) {
     return FALSE;
   }
 
-  // restore it.
+  // Restore it.
   $cache->restore();
   return $cache;
 }
@@ -68,7 +67,7 @@ function panels_get_cached_content($display, $args, $context, $pane = NULL) {
  * Store cached content for a given display and possibly pane.
  */
 function panels_set_cached_content($cache, $display, $args, $context, $pane = NULL) {
-  // Never use cache on a POST
+  // Never use cache on a POST.
   if (!empty($_POST)) {
     return FALSE;
   }
@@ -82,7 +81,7 @@ function panels_set_cached_content($cache, $display, $args, $context, $pane = NU
 
   $conf = $pane ? $pane->cache['settings'] : $display->cache['settings'];
 
-  // snapshot it.
+  // Snapshot it.
   $cache->cache();
   return $function($conf, $cache, $display, $args, $context, $pane);
 }
@@ -154,7 +153,7 @@ class panels_cache_object {
 
     $this->ready = TRUE;
 
-    // Simple replacement for head
+    // Simple replacement for head.
     $this->head = str_replace($this->head, '', drupal_add_html_head());
 
     // Slightly less simple for CSS:
@@ -248,6 +247,7 @@ class panels_cache_object {
       }
     }
   }
+
 }
 
 /**
@@ -412,7 +412,7 @@ function panels_get_renderer_handler($plugin, &$display) {
  * Choose a renderer for a display based on a render pipeline setting.
  */
 function panels_get_renderer($pipeline_name, &$display) {
-  // Load the pipeline
+  // Load the pipeline.
   ctools_include('export');
   $pipeline = ctools_export_crud_load('panels_renderer_pipeline', $pipeline_name);
 
@@ -443,7 +443,7 @@ function panels_get_renderer($pipeline_name, &$display) {
     return $renderer;
   }
 
-  // Fall through. If no renderer is selected, use the standard renderer
+  // Fall through. If no renderer is selected, use the standard renderer.
   return panels_get_renderer_handler('standard', $display);
 }
 
@@ -454,9 +454,9 @@ function panels_get_renderer($pipeline_name, &$display) {
  */
 function _panels_renderer_pipeline_sort($a, $b) {
   if ($a->weight == $b->weight) {
-      if ($a->admin_title == $b->admin_title) {
-        return 0;
-      }
+    if ($a->admin_title == $b->admin_title) {
+      return 0;
+    }
     return ($a->admin_title < $b->admin_title) ? -1 : 1;
   }
   return ($a->weight < $b->weight) ? -1 : 1;

sites/all/modules/contrib/panels/panels/panels.api.php

@@ -11,7 +11,7 @@
  * @param string $argument
  *   The second half of the cache key. Full key module:TASK_NAME:HANDLER_NAME
  *   passed part: TASK_NAME:HANDLER_NAME
- * @param stdClass $cache
+ * @param object $cache
  *   The display to cache.
  */
 function hook_panels_cache_set($argument, $cache) {
@@ -56,7 +56,7 @@ function hook_panels_cache_get($argument) {
  * @param string $argument
  *   The second half of the cache key. Full key module:TASK_NAME:HANDLER_NAME
  *   passed part: TASK_NAME:HANDLER_NAME
- * @param stdClass $cache
+ * @param object $cache
  *   The display to cache.
  *
  * @return stdClass
@@ -78,7 +78,7 @@ function hook_panels_cache_save($argument, $cache) {
  * @param string $argument
  *   The second half of the cache key. Full key module:TASK_NAME:HANDLER_NAME
  *   passed part: TASK_NAME:HANDLER_NAME
- * @param stdClass $cache
+ * @param object $cache
  *   The cached display.
  */
 function hook_panels_cache_clear($argument, $cache) {
@@ -105,9 +105,9 @@ function hook_panels_dashboard_blocks(&$vars) {
  *
  * This happens after the keyword substitution.
  *
- * @param stdClass $content
+ * @param object $content
  *   The content block to render.
- * @param stdClass $pane
+ * @param object $pane
  *   The pane object.
  * @param array $args
  *   The display arguments.
@@ -125,7 +125,7 @@ function hook_panels_pane_content_alter($content, $pane, $args, $contexts) {
  * @param string $argument
  *   The second half of the cache key. Full key module:TASK_NAME:HANDLER_NAME
  *   passed part: TASK_NAME:HANDLER_NAME
- * @param stdClass $cache
+ * @param object $cache
  *   The cached display.
  */
 function hook_panels_edit_cache_break_lock($argument, $cache) {
@@ -140,7 +140,7 @@ function hook_panels_edit_cache_break_lock($argument, $cache) {
  *
  * @param panels_display $panels_display
  *   The panels display that will be rendered.
- * @param stdClass $renderer
+ * @param object $renderer
  *   The renderer object that will be used to render.
  *
  * @return string
@@ -158,7 +158,7 @@ function hook_panels_pre_render($panels_display, $renderer) {
  *
  * @param panels_display $panels_display
  *   The rendered panels display.
- * @param stdClass $renderer
+ * @param object $renderer
  *   The used renderer object.
  *
  * @return string
@@ -171,7 +171,7 @@ function hook_panels_post_render($panels_display, $renderer) {
 /**
  * Fired before a new pane is inserted in the storage.
  *
- * @param stdClass $pane
+ * @param object $pane
  *   Pane that will be rendered.
  */
 function hook_panels_pane_insert($pane) {
@@ -188,7 +188,7 @@ function hook_panels_pane_insert($pane) {
 /**
  * Fired before a changed pane is updated in the storage.
  *
- * @param stdClass $pane
+ * @param object $pane
  *   Pane that will be rendered.
  */
 function hook_panels_pane_update($pane) {
@@ -208,7 +208,7 @@ function hook_panels_pane_update($pane) {
  * Last chance to modify the pane before the keyword substitution runs and the
  * pane is rendered.
  *
- * @param stdClass $pane
+ * @param object $pane
  *   Pane that will be rendered.
  */
 function hook_panels_pane_prerender($pane) {
@@ -250,7 +250,7 @@ function hook_panels_display_save($display) {
 /**
  * Fired before a display is deleted.
  *
- * @param integer $did
+ * @param int $did
  *   Id of the display to delete.
  */
 function hook_panels_delete_display($did) {

sites/all/modules/contrib/panels/panels/panels.info

@@ -18,9 +18,9 @@ files[] = tests/PanelsNodeViewWebTestCase.test
 files[] = tests/PanelsTermViewWebTestCase.test
 files[] = tests/PanelsUserViewWebTestCase.test
 
-; Information added by Drupal.org packaging script on 2016-10-16
-version = "7.x-3.8"
+; Information added by Drupal.org packaging script on 2017-02-06
+version = "7.x-3.9"
 core = "7.x"
 project = "panels"
-datestamp = "1476582295"
+datestamp = "1486394388"
 

sites/all/modules/contrib/panels/panels/panels.install

@@ -1,5 +1,9 @@
 <?php
 
+/**
+ * @file
+ */
+
 /**
  * Test requirements for installation and running.
  */
@@ -81,7 +85,7 @@ function panels_schema_9() {
   );
 
   return $schema;
- }
+}
 
 function panels_schema_8() {
   $schema = panels_schema_7();
@@ -308,7 +312,7 @@ function panels_schema_3() {
     ),
     'primary key' => array('pid'),
     'indexes' => array(
-      'did_idx' => array('did')
+      'did_idx' => array('did'),
     ),
   );
 
@@ -445,9 +449,7 @@ function panels_update_7300() {
  */
 function panels_update_7301() {
   // Load the schema.
-
   // Due to a previous failure, the field may already exist:
-
   $schema = panels_schema_4();
   $table = 'panels_pane';
   $field = 'locks';
@@ -627,7 +629,7 @@ function panels_update_7306() {
   }
 
   if (!empty($page_manager_panels)) {
-    // Check panels displays that only have empty storage types
+    // Check panels displays that only have empty storage types.
     $result = db_query("SELECT pd.did FROM {panels_display} pd WHERE pd.did IN (:dids) AND storage_type = ''", array(':dids' => array_keys($page_manager_panels)));
     foreach ($result as $row) {
       db_update('panels_display')
@@ -652,28 +654,15 @@ function panels_update_7307() {
     db_create_table($table_name, $schema[$table_name]);
   }
 
-  // Read existing allowed settings and store them in a new table.
-  $variables = db_select('variable', 'v')
-    ->fields('v', array('name'))
-    ->condition('name', '%' . db_like('_allowed_types'), 'LIKE')
-    ->execute()
-    ->fetchCol();
-  foreach ($variables as $name) {
-    $module = str_replace('_allowed_types', '', $name);
-    $variable = variable_get($name);
-    foreach ($variable as $type => $allowed) {
-      $allowed = empty($allowed) ? 0 : 1;
-      db_merge('panels_allowed_types')
-        ->key(array('module' => $module, 'type' => $type))
-        ->fields(array(
-          'module' => $module,
-          'type' => $type,
-          'allowed' => $allowed,
-        ))
-        ->execute();
-    }
-    variable_del($name);
-  }
+  /*
+  The version of this update hook in release 3.8 included code that
+  converted storage of allowed_types configuration from variables to the new
+  table, and also deleted existing allowed_types configuration variables.
+  See https://www.drupal.org/node/2479879.
+
+  In order to prevent data loss on sites that had not yet updated to 3.8, the
+  conversion and variable-deletion code has been removed from this update hook.
+   */
 }
 
 /**

sites/all/modules/contrib/panels/panels/panels_ipe/css/panels_ipe-rtl.css

@@ -1,4 +1,3 @@
-
 div.panels-ipe-handlebar-wrapper ul {
   float: right;
   text-align: left;

sites/all/modules/contrib/panels/panels/panels_ipe/css/panels_ipe.css

@@ -21,12 +21,12 @@ html.overlay-open body.panels-ipe {
 }
 
 div.panels-ipe-handlebar-wrapper {
-  border-bottom: 1px solid #CCC;
+  border-bottom: 1px solid #ccc;
 }
 
 .panels-ipe-editing div.panels-ipe-portlet-wrapper {
   margin-top: 1em;
-  border: 1px solid #CCC;
+  border: 1px solid #ccc;
   width: 100%;
 }
 
@@ -40,7 +40,7 @@ div.panels-ipe-handlebar-wrapper {
 }
 
 .panels-ipe-editing div.panels-ipe-portlet-wrapper:hover {
-  border: 1px dashed #CCC;
+  border: 1px dashed #ccc;
 }
 
 .panels-ipe-editing .panels-ipe-sort-container {
@@ -57,12 +57,12 @@ div.panels-ipe-handlebar-wrapper {
 
 .panels-ipe-editing .panels-ipe-sort-container .ui-sortable-placeholder {
   border: 2px dashed #999;
-  background-color: #FFFF99;
+  background-color: #ffff99;
   margin: 1em 0;
   -moz-border-radius: 0;
-	-khtml-border-radius: 0;
-	-webkit-border-radius: 0;
-	border-radius: 0;
+  -khtml-border-radius: 0;
+  -webkit-border-radius: 0;
+  border-radius: 0;
 }
 
 div.panels-ipe-handlebar-wrapper ul {
@@ -83,20 +83,19 @@ div.panels-ipe-handlebar-wrapper li {
 
 div.panels-ipe-draghandle,
 div.panels-ipe-nodraghandle {
-  background: #E9E9E9;
-  background-image: linear-gradient(bottom, #D5D5D5 0%, #FCFCFC 100%);
-  background-image: -o-linear-gradient(bottom, #D5D5D5 0%, #FCFCFC 100%);
-  background-image: -moz-linear-gradient(bottom, #D5D5D5 0%, #FCFCFC 100%);
-  background-image: -webkit-linear-gradient(bottom, #D5D5D5 0%, #FCFCFC 100%);
-  background-image: -ms-linear-gradient(bottom, #D5D5D5 0%, #FCFCFC 100%);
+  background: #e9e9e9;
+  background-image: linear-gradient(bottom, #d5d5d5 0%, #fcfcfc 100%);
+  background-image: -o-linear-gradient(bottom, #d5d5d5 0%, #fcfcfc 100%);
+  background-image: -moz-linear-gradient(bottom, #d5d5d5 0%, #fcfcfc 100%);
+  background-image: -webkit-linear-gradient(bottom, #d5d5d5 0%, #fcfcfc 100%);
+  background-image: -ms-linear-gradient(bottom, #d5d5d5 0%, #fcfcfc 100%);
   background-image: -webkit-gradient(
-    linear,
-    left bottom,
-    left top,
-    color-stop(0, #D5D5D5),
-    color-stop(1, #FCFCFC)
+  linear,
+  left bottom,
+  left top,
+  color-stop(0, #d5d5d5),
+  color-stop(1, #fcfcfc)
   );
-
   padding: 8px 7px;
 }
 
@@ -121,7 +120,7 @@ div.panels-ipe-placeholder {
   padding: .5em;
   position: relative;
   margin-top: .5em;
-  background-color: #ECFAFF;
+  background-color: #ecfaff;
   color: #999;
   font: 15px/1.3em "Open Sans", "Lucida Grande", Tahoma, Verdana, sans-serif;
   text-transform: none;
@@ -152,9 +151,9 @@ div.panels-ipe-placeholder h3 {
 }
 
 div.panels-ipe-newblock {
-  -webkit-box-shadow: 0px 0 5px 5px #ECFAFF;
-  -moz-box-shadow: 0px 0 5px 5px #ECFAFF;
-  box-shadow: 0px 0 5px 5px #ECFAFF;
+  -webkit-box-shadow: 0px 0 5px 5px #ecfaff;
+  -moz-box-shadow: 0px 0 5px 5px #ecfaff;
+  box-shadow: 0px 0 5px 5px #ecfaff;
   position: absolute;
   right: 10px;
   top: 50%;
@@ -174,32 +173,30 @@ div.panels-ipe-newblock a,
 span.panels-ipe-draghandle-icon {
   display: inline-block;
   border: 1px solid #ccc;
-	padding: 0 8px 1px;
-	font: bold 12px/32px 'Open Sans', 'Lucida Sans', 'Lucida Grande', verdana sans-serif;
-	text-decoration: none;
-	height: 33px;
-	color: #666;
-	cursor: pointer;
-	outline: none;
-	-moz-border-radius: 3px;
-	-khtml-border-radius: 3px;
-	-webkit-border-radius: 3px;
-	border-radius: 3px;
-
-	background: #FAFAFA;
-  background-image: linear-gradient(bottom, #E9EAEC 0%, #FAFAFA 100%);
-  background-image: -o-linear-gradient(bottom, #E9EAEC 0%, #FAFAFA 100%);
-  background-image: -moz-linear-gradient(bottom, #E9EAEC 0%, #FAFAFA 100%);
-  background-image: -webkit-linear-gradient(bottom, #E9EAEC 0%, #FAFAFA 100%);
-  background-image: -ms-linear-gradient(bottom, #E9EAEC 0%, #FAFAFA 100%);
+  padding: 0 8px 1px;
+  font: bold 12px/32px 'Open Sans', 'Lucida Sans', 'Lucida Grande', verdana sans-serif;
+  text-decoration: none;
+  height: 33px;
+  color: #666;
+  cursor: pointer;
+  outline: none;
+  -moz-border-radius: 3px;
+  -khtml-border-radius: 3px;
+  -webkit-border-radius: 3px;
+  border-radius: 3px;
+  background: #fafafa;
+  background-image: linear-gradient(bottom, #e9eaec 0%, #fafafa 100%);
+  background-image: -o-linear-gradient(bottom, #e9eaec 0%, #fafafa 100%);
+  background-image: -moz-linear-gradient(bottom, #e9eaec 0%, #fafafa 100%);
+  background-image: -webkit-linear-gradient(bottom, #e9eaec 0%, #fafafa 100%);
+  background-image: -ms-linear-gradient(bottom, #e9eaec 0%, #fafafa 100%);
   background-image: -webkit-gradient(
-    linear,
-    left bottom,
-    left top,
-    color-stop(0, #E9EAEC),
-    color-stop(1, #FAFAFA)
+  linear,
+  left bottom,
+  left top,
+  color-stop(0, #e9eaec),
+  color-stop(1, #fafafa)
   );
-
   -webkit-box-shadow: 0px 3px 3px 0px #d2d2d2;
   -moz-box-shadow: 0px 3px 3px 0px #d2d2d2;
   box-shadow: 0px 3px 3px 0px #d2d2d2;
@@ -220,6 +217,10 @@ div.panels-ipe-handlebar-wrapper li.edit a span {
   background-image: url(../images/icon-settings.png);
 }
 
+div.panels-ipe-handlebar-wrapper li.css a span {
+  background-image: url(../images/icon-css.png);
+}
+
 div.panels-ipe-handlebar-wrapper li.style a span,
 div.panels-ipe-newblock a.style span {
   background-image: url(../images/icon-style.png);
@@ -244,18 +245,18 @@ div.panels-ipe-newblock a:hover,
 span.panels-ipe-draghandle-icon:hover,
 div.panels-ipe-handlebar-wrapper li a:focus,
 div.panels-ipe-newblock a:focus {
-  background: #E6E6E6;
-  background-image: linear-gradient(bottom, #C5C5C5 0%, #FAFAFA 100%);
-  background-image: -o-linear-gradient(bottom, #C5C5C5 0%, #FAFAFA 100%);
-  background-image: -moz-linear-gradient(bottom, #C5C5C5 0%, #FAFAFA 100%);
-  background-image: -webkit-linear-gradient(bottom, #C5C5C5 0%, #FAFAFA 100%);
-  background-image: -ms-linear-gradient(bottom, #C5C5C5 0%, #FAFAFA 100%);
+  background: #e6e6e6;
+  background-image: linear-gradient(bottom, #c5c5c5 0%, #fafafa 100%);
+  background-image: -o-linear-gradient(bottom, #c5c5c5 0%, #fafafa 100%);
+  background-image: -moz-linear-gradient(bottom, #c5c5c5 0%, #fafafa 100%);
+  background-image: -webkit-linear-gradient(bottom, #c5c5c5 0%, #fafafa 100%);
+  background-image: -ms-linear-gradient(bottom, #c5c5c5 0%, #fafafa 100%);
   background-image: -webkit-gradient(
-    linear,
-    left bottom,
-    left top,
-    color-stop(0, #C5C5C5),
-    color-stop(1, #FAFAFA)
+  linear,
+  left bottom,
+  left top,
+  color-stop(0, #c5c5c5),
+  color-stop(1, #fafafa)
   );
 }
 
@@ -264,19 +265,18 @@ div.panels-ipe-dragtitle span:active,
 div.panels-ipe-newblock a:active,
 span.panels-ipe-draghandle-icon:active {
   outline: none;
-  background-image: linear-gradient(bottom, #FFFFFF 0%, #E9EAEC 100%);
-  background-image: -o-linear-gradient(bottom, #FFFFFF 0%, #E9EAEC 100%);
-  background-image: -moz-linear-gradient(bottom, #FFFFFF 0%, #E9EAEC 100%);
-  background-image: -webkit-linear-gradient(bottom, #FFFFFF 0%, #E9EAEC 100%);
-  background-image: -ms-linear-gradient(bottom, #FFFFFF 0%, #E9EAEC 100%);
+  background-image: linear-gradient(bottom, #ffffff 0%, #e9eaec 100%);
+  background-image: -o-linear-gradient(bottom, #ffffff 0%, #e9eaec 100%);
+  background-image: -moz-linear-gradient(bottom, #ffffff 0%, #e9eaec 100%);
+  background-image: -webkit-linear-gradient(bottom, #ffffff 0%, #e9eaec 100%);
+  background-image: -ms-linear-gradient(bottom, #ffffff 0%, #e9eaec 100%);
   background-image: -webkit-gradient(
-    linear,
-    left bottom,
-    left top,
-    color-stop(0, #FFFFFF),
-    color-stop(1, #E9EAEC)
+  linear,
+  left bottom,
+  left top,
+  color-stop(0, #ffffff),
+  color-stop(1, #e9eaec)
   );
-
   -webkit-box-shadow: 0px 0px 0px 0px #fff;
   -moz-box-shadow: 0px 0px 0px 0px #fff;
   box-shadow: 0px 0px 0px 0px #fff;
@@ -359,19 +359,18 @@ div.panels-ipe-control .form-submit {
   background-image: -moz-linear-gradient(bottom, #383838 0%, #666666 100%);
   background-image: -webkit-linear-gradient(bottom, #383838 0%, #666666 100%);
   background-image: -ms-linear-gradient(bottom, #383838 0%, #666666 100%);
-
   background-image: -webkit-gradient(
-    linear,
-    left bottom,
-    left top,
-    color-stop(0, #383838),
-    color-stop(1, #666666)
+  linear,
+  left bottom,
+  left top,
+  color-stop(0, #383838),
+  color-stop(1, #666666)
   );
   border: 0;
   -moz-border-radius: 3px;
   -webkit-border-radius: 3px;
   border-radius: 3px;
-  color: #CCC;
+  color: #ccc;
   display: inline-block;
   font: bold 12px/33px "Open Sans", "Lucida Grande", Tahoma, Verdana, sans-serif;
   height: 33px;
@@ -382,10 +381,14 @@ div.panels-ipe-control .form-submit {
   padding: 0 0.8em 2px 34px;
 }
 
-div.panels-ipe-control input.panels-ipe-save, div.panels-ipe-control input.panels-ipe-cancel,
-div.panels-ipe-control input.panels-ipe-save:hover, div.panels-ipe-control input.panels-ipe-cancel:hover,
-div.panels-ipe-control input.panels-ipe-save:focus, div.panels-ipe-control input.panels-ipe-cancel:focus,
-div.panels-ipe-control input.panels-ipe-save:active, div.panels-ipe-control input.panels-ipe-cancel:active {
+div.panels-ipe-control input.panels-ipe-save,
+div.panels-ipe-control input.panels-ipe-cancel,
+div.panels-ipe-control input.panels-ipe-save:hover,
+div.panels-ipe-control input.panels-ipe-cancel:hover,
+div.panels-ipe-control input.panels-ipe-save:focus,
+div.panels-ipe-control input.panels-ipe-cancel:focus,
+div.panels-ipe-control input.panels-ipe-save:active,
+div.panels-ipe-control input.panels-ipe-cancel:active {
   background-repeat: no-repeat;
 }
 
@@ -393,7 +396,7 @@ div.panels-ipe-pseudobutton-container a {
   height: 33px;
   padding: 0 0.8em;
   display: inline-block;
-  color: #CCC;
+  color: #ccc;
   text-decoration: none;
 }
 
@@ -404,13 +407,12 @@ div.panels-ipe-control .panels-ipe-save {
   background-image: url(../images/icon-save.png), -moz-linear-gradient(bottom, #383838 0%, #666666 100%);
   background-image: url(../images/icon-save.png), -webkit-linear-gradient(bottom, #383838 0%, #666666 100%);
   background-image: url(../images/icon-save.png), -ms-linear-gradient(bottom, #383838 0%, #666666 100%);
-
   background-image: url(../images/icon-save.png), -webkit-gradient(
-    linear,
-    left bottom,
-    left top,
-    color-stop(0, #383838),
-    color-stop(1, #666666)
+  linear,
+  left bottom,
+  left top,
+  color-stop(0, #383838),
+  color-stop(1, #666666)
   );
 }
 
@@ -421,13 +423,12 @@ div.panels-ipe-control .panels-ipe-cancel {
   background-image: url(../images/icon-close.png), -moz-linear-gradient(bottom, #383838 0%, #666666 100%);
   background-image: url(../images/icon-close.png), -webkit-linear-gradient(bottom, #383838 0%, #666666 100%);
   background-image: url(../images/icon-close.png), -ms-linear-gradient(bottom, #383838 0%, #666666 100%);
-
   background-image: url(../images/icon-close.png), -webkit-gradient(
-    linear,
-    left bottom,
-    left top,
-    color-stop(0, #383838),
-    color-stop(1, #666666)
+  linear,
+  left bottom,
+  left top,
+  color-stop(0, #383838),
+  color-stop(1, #666666)
   );
 }
 
@@ -436,58 +437,55 @@ div.panels-ipe-control .form-submit:hover,
 div.panels-ipe-pseudobutton-container:focus,
 div.panels-ipe-control .form-submit:focus {
   background: #999999;
-  background-image: linear-gradient(bottom, #3D3D3D 0%, #999999 100%);
-  background-image: -o-linear-gradient(bottom, #3D3D3D 0%, #999999 100%);
-  background-image: -moz-linear-gradient(bottom, #3D3D3D 0%, #999999 100%);
-  background-image: -webkit-linear-gradient(bottom, #3D3D3D 0%, #999999 100%);
-  background-image: -ms-linear-gradient(bottom, #3D3D3D 0%, #999999 100%);
+  background-image: linear-gradient(bottom, #3d3d3d 0%, #999999 100%);
+  background-image: -o-linear-gradient(bottom, #3d3d3d 0%, #999999 100%);
+  background-image: -moz-linear-gradient(bottom, #3d3d3d 0%, #999999 100%);
+  background-image: -webkit-linear-gradient(bottom, #3d3d3d 0%, #999999 100%);
+  background-image: -ms-linear-gradient(bottom, #3d3d3d 0%, #999999 100%);
   background-image: -webkit-gradient(
-    linear,
-    left bottom,
-    left top,
-    color-stop(0, #3D3D3D),
-    color-stop(1, #999999)
+  linear,
+  left bottom,
+  left top,
+  color-stop(0, #3d3d3d),
+  color-stop(1, #999999)
   );
-
-  color: #FFF;
+  color: #fff;
 }
 
 div.panels-ipe-pseudobutton-container a:hover,
 div.panels-ipe-pseudobutton-container a:focus {
-  color: #FFF;
+  color: #fff;
 }
 
 div.panels-ipe-control .panels-ipe-cancel:hover,
 div.panels-ipe-control .panels-ipe-cancel:focus {
-  background-image: url(../images/icon-close.png), linear-gradient(bottom, #3D3D3D 0%, #999999 100%);
-  background-image: url(../images/icon-close.png), -o-linear-gradient(bottom, #3D3D3D 0%, #999999 100%);
-  background-image: url(../images/icon-close.png), -moz-linear-gradient(bottom, #3D3D3D 0%, #999999 100%);
-  background-image: url(../images/icon-close.png), -webkit-linear-gradient(bottom, #3D3D3D 0%, #999999 100%);
-  background-image: url(../images/icon-close.png), -ms-linear-gradient(bottom, #3D3D3D 0%, #999999 100%);
-
+  background-image: url(../images/icon-close.png), linear-gradient(bottom, #3d3d3d 0%, #999999 100%);
+  background-image: url(../images/icon-close.png), -o-linear-gradient(bottom, #3d3d3d 0%, #999999 100%);
+  background-image: url(../images/icon-close.png), -moz-linear-gradient(bottom, #3d3d3d 0%, #999999 100%);
+  background-image: url(../images/icon-close.png), -webkit-linear-gradient(bottom, #3d3d3d 0%, #999999 100%);
+  background-image: url(../images/icon-close.png), -ms-linear-gradient(bottom, #3d3d3d 0%, #999999 100%);
   background-image: url(../images/icon-close.png), -webkit-gradient(
-    linear,
-    left bottom,
-    left top,
-    color-stop(0, #3D3D3D),
-    color-stop(1, #999999)
+  linear,
+  left bottom,
+  left top,
+  color-stop(0, #3d3d3d),
+  color-stop(1, #999999)
   );
 }
 
 div.panels-ipe-control .panels-ipe-save:hover,
 div.panels-ipe-control .panels-ipe-save:focus {
-  background-image: url(../images/icon-save.png), linear-gradient(bottom, #3D3D3D 0%, #999999 100%);
-  background-image: url(../images/icon-save.png), -o-linear-gradient(bottom, #3D3D3D 0%, #999999 100%);
-  background-image: url(../images/icon-save.png), -moz-linear-gradient(bottom, #3D3D3D 0%, #999999 100%);
-  background-image: url(../images/icon-save.png), -webkit-linear-gradient(bottom, #3D3D3D 0%, #999999 100%);
-  background-image: url(../images/icon-save.png), -ms-linear-gradient(bottom, #3D3D3D 0%, #999999 100%);
-
+  background-image: url(../images/icon-save.png), linear-gradient(bottom, #3d3d3d 0%, #999999 100%);
+  background-image: url(../images/icon-save.png), -o-linear-gradient(bottom, #3d3d3d 0%, #999999 100%);
+  background-image: url(../images/icon-save.png), -moz-linear-gradient(bottom, #3d3d3d 0%, #999999 100%);
+  background-image: url(../images/icon-save.png), -webkit-linear-gradient(bottom, #3d3d3d 0%, #999999 100%);
+  background-image: url(../images/icon-save.png), -ms-linear-gradient(bottom, #3d3d3d 0%, #999999 100%);
   background-image: url(../images/icon-save.png), -webkit-gradient(
-    linear,
-    left bottom,
-    left top,
-    color-stop(0, #3D3D3D),
-    color-stop(1, #999999)
+  linear,
+  left bottom,
+  left top,
+  color-stop(0, #3d3d3d),
+  color-stop(1, #999999)
   );
 }
 
@@ -499,20 +497,18 @@ div.panels-ipe-control .form-submit:active {
   background-image: -moz-linear-gradient(bottom, #616161 0%, #333333 100%);
   background-image: -webkit-linear-gradient(bottom, #616161 0%, #333333 100%);
   background-image: -ms-linear-gradient(bottom, #616161 0%, #333333 100%);
-
   background-image: -webkit-gradient(
-    linear,
-    left bottom,
-    left top,
-    color-stop(0, #616161),
-    color-stop(1, #333333)
+  linear,
+  left bottom,
+  left top,
+  color-stop(0, #616161),
+  color-stop(1, #333333)
   );
-
-  color: #CCC;
+  color: #ccc;
 }
 
 div.panels-ipe-pseudobutton-container a:active {
-  color: #CCC;
+  color: #ccc;
 }
 
 div.panels-ipe-control .panels-ipe-cancel:active {
@@ -521,13 +517,12 @@ div.panels-ipe-control .panels-ipe-cancel:active {
   background-image: url(../images/icon-close.png), -moz-linear-gradient(bottom, #616161 0%, #333333 100%);
   background-image: url(../images/icon-close.png), -webkit-linear-gradient(bottom, #616161 0%, #333333 100%);
   background-image: url(../images/icon-close.png), -ms-linear-gradient(bottom, #616161 0%, #333333 100%);
-
   background-image: url(../images/icon-close.png), -webkit-gradient(
-    linear,
-    left bottom,
-    left top,
-    color-stop(0, #616161),
-    color-stop(1, #333333)
+  linear,
+  left bottom,
+  left top,
+  color-stop(0, #616161),
+  color-stop(1, #333333)
   );
 }
 
@@ -537,19 +532,21 @@ div.panels-ipe-control .panels-ipe-save:active {
   background-image: url(../images/icon-save.png), -moz-linear-gradient(bottom, #616161 0%, #333333 100%);
   background-image: url(../images/icon-save.png), -webkit-linear-gradient(bottom, #616161 0%, #333333 100%);
   background-image: url(../images/icon-save.png), -ms-linear-gradient(bottom, #616161 0%, #333333 100%);
-
   background-image: url(../images/icon-save.png), -webkit-gradient(
-    linear,
-    left bottom,
-    left top,
-    color-stop(0, #616161),
-    color-stop(1, #333333)
+  linear,
+  left bottom,
+  left top,
+  color-stop(0, #616161),
+  color-stop(1, #333333)
   );
 }
 
-div.panels-ipe-control .panels-ipe-save, div.panels-ipe-control .panels-ipe-cancel,
-div.panels-ipe-control .panels-ipe-save:hover, div.panels-ipe-control .panels-ipe-cancel:hover,
-div.panels-ipe-control .panels-ipe-save:active, div.panels-ipe-control .panels-ipe-cancel:active {
+div.panels-ipe-control .panels-ipe-save,
+div.panels-ipe-control .panels-ipe-cancel,
+div.panels-ipe-control .panels-ipe-save:hover,
+div.panels-ipe-control .panels-ipe-cancel:hover,
+div.panels-ipe-control .panels-ipe-save:active,
+div.panels-ipe-control .panels-ipe-cancel:active {
   background-repeat: no-repeat;
 }
 
@@ -572,6 +569,6 @@ form#panels-ipe-edit-control-form {
   text-align: center;
 }
 
-.panels-ipe-dragbar-admin-title{
+.panels-ipe-dragbar-admin-title {
   font-size: 0.9em;
 }

sites/all/modules/contrib/panels/panels/panels_ipe/includes/panels_ipe.pipelines.inc

@@ -11,7 +11,7 @@
 function panels_ipe_default_panels_renderer_pipeline() {
   $pipelines = array();
 
-  $pipeline = new stdClass;
+  $pipeline = new stdClass();
   $pipeline->disabled = FALSE; /* Edit this to true to make a default pipeline disabled initially */
   $pipeline->api_version = 1;
   $pipeline->name = 'ipe';

sites/all/modules/contrib/panels/panels/panels_ipe/js/panels_ipe.js

@@ -50,7 +50,7 @@ Drupal.behaviors.PanelsIPE = {
           Drupal.PanelsIPE.editors[key].showContainer();
         });
     }
-    $('.panels-ipe-hide-bar').once('panels-ipe-hide-bar-processed').click(function() {
+    $('.panels-ipe-hide-bar').once('panels-ipe-hide-bar').click(function() {
       Drupal.PanelsIPE.editors[key].hideContainer();
     });
     Drupal.PanelsIPE.bindClickDelete(context);
@@ -83,6 +83,7 @@ function DrupalPanelsIPE(cache_key, cfg) {
     items: 'div.panels-ipe-portlet-wrapper',
     handle: 'div.panels-ipe-draghandle',
     cancel: '.panels-ipe-nodrag',
+    tolerance: 'pointer',
     dropOnEmpty: true
   }, cfg.sortableOptions || {});
 
@@ -311,6 +312,7 @@ function DrupalPanelsIPE(cache_key, cfg) {
       // @todo this isn't ideal but I can't seem to figure out how to keep an unprocessed backup
       // that will later get processed.
       $('.ctools-use-modal-processed', ipe.topParent).removeClass('ctools-use-modal-processed');
+      $('.panels-ipe-hide-bar-processed', ipe.topParent).removeClass('panels-ipe-hide-bar-processed');
       $('.pane-delete-processed', ipe.topParent).removeClass('pane-delete-processed');
       ipe.topParent.fadeIn('medium');
       Drupal.attachBehaviors();

sites/all/modules/contrib/panels/panels/panels_ipe/panels_ipe.info

@@ -6,9 +6,9 @@ core = 7.x
 configure = admin/structure/panels
 files[] = panels_ipe.module
 
-; Information added by Drupal.org packaging script on 2016-10-16
-version = "7.x-3.8"
+; Information added by Drupal.org packaging script on 2017-02-06
+version = "7.x-3.9"
 core = "7.x"
 project = "panels"
-datestamp = "1476582295"
+datestamp = "1486394388"
 

sites/all/modules/contrib/panels/panels/panels_ipe/panels_ipe.module

@@ -1,5 +1,9 @@
 <?php
 
+/**
+ * @file
+ */
+
 /**
  * Implementation of hook_ctools_plugin_directory().
  */
@@ -90,12 +94,12 @@ function template_preprocess_panels_ipe_pane_wrapper(&$vars) {
       'attributes' => array(
         'class' => array('ctools-use-modal', 'panels-ipe-hide-bar'),
         'title' => isset($content_type['edit text']) ? $content_type['edit text'] : t('Settings'),
-        // 'id' => "pane-edit-panel-pane-$pane->pid",
+        // 'id' => "pane-edit-panel-pane-$pane->pid",.
       ),
     );
   }
 
-  // Add option to configure style in IPE
+  // Add option to configure style in IPE.
   if (user_access('administer panels pane styles')) {
     $vars['links']['style'] = array(
       'title' => '<span>' . t('Style') . '</span>',
@@ -108,8 +112,21 @@ function template_preprocess_panels_ipe_pane_wrapper(&$vars) {
     );
   }
 
+  // Add option to configure CSS.
+  if (user_access('administer advanced pane settings')) {
+    $vars['links']['css'] = array(
+      'title' => '<span>' . t('CSS') . '</span>',
+      'href' => $renderer->get_url('pane-css', $pane->pid),
+      'html' => TRUE,
+      'attributes' => array(
+        'class' => array('ctools-use-modal', 'panels-ipe-hide-bar'),
+        'title' => t('CSS'),
+      ),
+    );
+  }
+
   // Deleting is managed entirely in the js; this is just an attachment point
-  // for it
+  // for it.
   $vars['links']['delete'] = array(
     'title' => '<span>' . t('Delete') . '</span>',
     'href' => '#',
@@ -124,7 +141,7 @@ function template_preprocess_panels_ipe_pane_wrapper(&$vars) {
   $context = array(
     'pane' => $pane,
     'display' => $display,
-    'renderer' => $renderer
+    'renderer' => $renderer,
   );
   drupal_alter('panels_ipe_pane_links', $vars['links'], $context);
 
@@ -140,12 +157,12 @@ function theme_panels_ipe_pane_wrapper($vars) {
   );
 
   $type = ctools_get_content_type($pane->type);
-  $title ='<span class = "panels-ipe-dragbar-admin-title">' . ctools_content_admin_title($type, $pane->subtype, $pane->configuration, $display->context) . '</span>';
+  $title = '<span class = "panels-ipe-dragbar-admin-title">' . ctools_content_admin_title($type, $pane->subtype, $pane->configuration, $display->context) . '</span>';
 
   $links = theme('links', array('links' => $vars['links'], 'attributes' => $attributes));
 
   if (!empty($pane->locks['type']) && $pane->locks['type'] == 'immovable') {
-    $links = '<div class="panels-ipe-dragbar panels-ipe-nodraghandle clearfix">' . $links .$title .'</div>';
+    $links = '<div class="panels-ipe-dragbar panels-ipe-nodraghandle clearfix">' . $links . $title . '</div>';
   }
   else {
     $links = '<div class="panels-ipe-dragbar panels-ipe-draghandle clearfix">' . $links . $title . '<span class="panels-ipe-draghandle-icon"><span class="panels-ipe-draghandle-icon-inner"></span></span></div>';
@@ -164,9 +181,9 @@ function template_preprocess_panels_ipe_add_pane_button(&$vars) {
   $region_id = $vars['region_id'];
   $display = $vars['display'];
   $renderer = $vars['renderer'];
-  $vars['links'] = '';
+  $vars['links'] = array();
 
-  // Add option to configure style in IPE
+  // Add option to configure style in IPE.
   if (user_access('administer panels region styles')) {
     $vars['links']['style'] = array(
       'title' => '<span>' . t('Region style') . '</span>',
@@ -179,7 +196,7 @@ function template_preprocess_panels_ipe_add_pane_button(&$vars) {
     );
   }
 
-  // Add option to add items in the IPE
+  // Add option to add items in the IPE.
   $vars['links']['add-pane'] = array(
     'title' => '<span>' . t('Add new pane') . '</span>',
     'href' => $renderer->get_url('select-content', $region_id),
@@ -226,7 +243,7 @@ function panels_ipe_toolbar_add_button($cache_key, $id, $button) {
 }
 
 /**
- * Implementation of hook_footer()
+ * Implementation of hook_footer().
  *
  * Adds the IPE control container.
  *

sites/all/modules/contrib/panels/panels/panels_ipe/plugins/display_renderers/ipe.inc

@@ -1,5 +1,9 @@
 <?php
 
+/**
+ * @file
+ */
+
 $plugin = array(
   'renderer' => 'panels_renderer_ipe',
 );

sites/all/modules/contrib/panels/panels/panels_ipe/plugins/display_renderers/panels_renderer_ipe.class.php

@@ -1,5 +1,9 @@
 <?php
 
+/**
+ * @file
+ */
+
 /**
  * Renderer class for all In-Place Editor (IPE) behavior.
  */
@@ -54,7 +58,6 @@ class panels_renderer_ipe extends panels_renderer_editor {
     // @todo we may need an else to load the cache, but I am not sure we
     // actually need to load it if we already have our cache key, and doing
     // so is a waste of resources.
-
     ctools_include('cleanstring');
     $this->clean_key = ctools_cleanstring($this->display->cache_key);
     $button = array(
@@ -91,8 +94,8 @@ class panels_renderer_ipe extends panels_renderer_editor {
           'ipe_cache_key' => $this->clean_key,
         ),
 
-      '#prefix' => '<div class="panels-ipe-pseudobutton-container">',
-      '#suffix' => '</div>',
+        '#prefix' => '<div class="panels-ipe-pseudobutton-container">',
+        '#suffix' => '</div>',
       );
 
       panels_ipe_toolbar_add_button($this->display->cache_key, 'panels-ipe-change-layout', $button);
@@ -156,13 +159,13 @@ class panels_renderer_ipe extends panels_renderer_editor {
 
     if (empty($pane->IPE_empty)) {
       // Add an inner layer wrapper to the pane content before placing it into
-      // draggable portlet
+      // draggable portlet.
       $output = "<div class=\"panels-ipe-portlet-content\">$output</div>";
     }
     else {
       $output = "<div class=\"panels-ipe-portlet-content panels-ipe-empty-pane\">$output</div>";
     }
-    // Hand it off to the plugin/theme for placing draggers/buttons
+    // Hand it off to the plugin/theme for placing draggers/buttons.
     $output = theme('panels_ipe_pane_wrapper', array('output' => $output, 'pane' => $pane, 'display' => $this->display, 'renderer' => $this));
 
     if (!empty($pane->locks['type']) && $pane->locks['type'] == 'immovable') {
@@ -259,13 +262,17 @@ class panels_renderer_ipe extends panels_renderer_editor {
       // Break the lock.
       panels_edit_cache_break_lock($this->cache);
     }
-  } 
+  }
 
+  /**
+   *
+   */
   function get_panels_storage_op_for_ajax($method) {
     switch ($method) {
       case 'ajax_unlock_ipe':
       case 'ajax_save_form':
         return 'update';
+
       case 'ajax_change_layout':
       case 'ajax_set_layout':
         return 'change layout';
@@ -299,7 +306,7 @@ class panels_renderer_ipe extends panels_renderer_editor {
 
     // Reset the $_POST['ajax_html_ids'] values to preserve
     // proper IDs on form elements when they are rebuilt
-    // by the Panels IPE without refreshing the page
+    // by the Panels IPE without refreshing the page.
     $_POST['ajax_html_ids'] = array();
 
     $form_state = array(
@@ -308,7 +315,7 @@ class panels_renderer_ipe extends panels_renderer_editor {
       'content_types' => $this->cache->content_types,
       'rerender' => FALSE,
       'no_redirect' => TRUE,
-      // Panels needs this to make sure that the layout gets callbacks
+      // Panels needs this to make sure that the layout gets callbacks.
       'layout' => $this->plugins['layout'],
     );
 
@@ -348,6 +355,9 @@ class panels_renderer_ipe extends panels_renderer_editor {
       $buttons = &drupal_static('panels_ipe_toolbar_buttons', array());
       $output = theme('panels_ipe_toolbar', array('buttons' => $buttons));
       $this->commands[] = ajax_command_replace('#panels-ipe-control-container', $output);
+
+      $storage_id = $this->cache->display->storage_id;
+      cache_clear_all('panels_mini_load:' . $storage_id, 'cache_panels', TRUE);
     }
     else {
       // Cancelled. Clear the cache.
@@ -383,13 +393,13 @@ class panels_renderer_ipe extends panels_renderer_editor {
       $layouts = panels_common_get_allowed_layouts('panels_page');
     }
 
-    // Filter out builders
+    // Filter out builders.
     $layouts = array_filter($layouts, '_panels_builder_filter');
 
     // Let other modules filter the layouts.
     drupal_alter('panels_layouts_available', $layouts);
 
-    // Define the current layout
+    // Define the current layout.
     $current_layout = $this->plugins['layout']['name'];
 
     $output = panels_common_print_layout_links($layouts, $this->get_url('set_layout'), array('attributes' => array('class' => array('use-ajax'))), $current_layout);
@@ -414,7 +424,7 @@ class panels_renderer_ipe extends panels_renderer_editor {
 
     // Reset the $_POST['ajax_html_ids'] values to preserve
     // proper IDs on form elements when they are rebuilt
-    // by the Panels IPE without refreshing the page
+    // by the Panels IPE without refreshing the page.
     $_POST['ajax_html_ids'] = array();
 
     $output = drupal_build_form('panels_change_layout', $form_state);
@@ -485,6 +495,7 @@ class panels_renderer_ipe extends panels_renderer_editor {
       'key' => $this->clean_key,
     );
   }
+
 }
 
 /**
@@ -493,8 +504,7 @@ class panels_renderer_ipe extends panels_renderer_editor {
 function panels_ipe_edit_control_form($form, &$form_state) {
   $display = &$form_state['display'];
   // @todo -- this should be unnecessary as we ensure cache_key is set in add_meta()
-//  $display->cache_key = isset($display->cache_key) ? $display->cache_key : $display->did;
-
+  //   $display->cache_key = isset($display->cache_key) ? $display->cache_key : $display->did;
   // Annoyingly, theme doesn't have access to form_state so we have to do this.
   $form['#display'] = $display;
 

sites/all/modules/contrib/panels/panels/panels_mini/panels_mini.info

@@ -4,9 +4,10 @@ package = "Panels"
 dependencies[] = panels
 core = 7.x
 files[] = plugins/export_ui/panels_mini_ui.class.php
-; Information added by Drupal.org packaging script on 2016-10-16
-version = "7.x-3.8"
+
+; Information added by Drupal.org packaging script on 2017-02-06
+version = "7.x-3.9"
 core = "7.x"
 project = "panels"
-datestamp = "1476582295"
+datestamp = "1486394388"
 

sites/all/modules/contrib/panels/panels/panels_mini/panels_mini.install

@@ -1,5 +1,9 @@
 <?php
 
+/**
+ * @file
+ */
+
 /**
  * Implementation of hook_schema().
  */
@@ -105,7 +109,7 @@ function panels_mini_uninstall() {
   foreach ($result as $panel_mini) {
     // Delete all associated displays.
     if (!function_exists('panels_delete_display')) {
-      require_once drupal_get_path('module', 'panels') .'/panels.module';
+      require_once drupal_get_path('module', 'panels') . '/panels.module';
     }
     if ($panels_exists) {
       panels_delete_display($panel_mini->did);
@@ -127,7 +131,7 @@ function panels_mini_uninstall() {
  * Implements hook_update_dependencies().
  */
 function panels_mini_update_dependencies() {
-  // Update 7301 requires panels storage support
+  // Update 7301 requires panels storage support.
   $dependencies['panels_mini'][7301] = array(
     'panels' => 7305,
   );
@@ -140,19 +144,19 @@ function panels_mini_update_dependencies() {
  */
 function panels_mini_update_7301() {
   if (!isset($sandbox['progress'])) {
-     // Initialize batch update information.
-     $sandbox['progress'] = (float)0;
-     $sandbox['current_did'] = -1;
-     $sandbox['max'] = db_query("SELECT COUNT(pd.did)
+    // Initialize batch update information.
+    $sandbox['progress'] = (float) 0;
+    $sandbox['current_did'] = -1;
+    $sandbox['max'] = db_query("SELECT COUNT(pd.did)
          FROM {panels_display} pd
            JOIN {panels_mini} pm ON pm.did = pd.did
          WHERE pd.storage_type = ''")->fetchField();
-   }
+  }
 
   // Set a limit of how many rows to process per batch.
   $limit = 1000;
 
-  // Run the query
+  // Run the query.
   $result = db_query_range("SELECT pd.did, pm.name
       FROM {panels_display} pd
         JOIN {panels_mini} pm ON pm.did = pd.did

sites/all/modules/contrib/panels/panels/panels_mini/panels_mini.module

@@ -39,7 +39,7 @@ function panels_mini_menu() {
     'type' => MENU_LOCAL_TASK,
   );
 
-  // Also provide settings on the main panel UI
+  // Also provide settings on the main panel UI.
   $items['admin/structure/panels/settings/panels-mini'] = array(
     'title' => 'Mini panels',
     'page callback' => 'panels_mini_settings',
@@ -59,8 +59,7 @@ function panels_mini_settings() {
 }
 
 // ---------------------------------------------------------------------------
-// Allow the rest of the system access to mini panels
-
+// Allow the rest of the system access to mini panels.
 /**
  * Implementation of hook_block_info().
  */
@@ -91,7 +90,7 @@ function panels_mini_block_info() {
  * @see panels_mini_panels_mini_content_type_render().
  */
 function panels_mini_block_view($delta = 0) {
-  // static recursion protection.
+  // Static recursion protection.
   static $viewing = array();
   if (!empty($viewing[$delta])) {
     return;
@@ -114,7 +113,7 @@ function panels_mini_block_view($delta = 0) {
   }
   drupal_alter('panels_mini_block_contexts', $contexts, $panel_mini);
 
-  $panel_mini->context = $panel_mini->display->context =  ctools_context_load_contexts($panel_mini, FALSE, $contexts);
+  $panel_mini->context = $panel_mini->display->context = ctools_context_load_contexts($panel_mini, FALSE, $contexts);
   $panel_mini->display->css_id = panels_mini_get_id($panel_mini->name);
   $panel_mini->display->owner = $panel_mini;
 
@@ -133,7 +132,7 @@ function panels_mini_block_view($delta = 0) {
 function panels_mini_block_configure($delta = 0) {
   return array(
     'admin_shortcut' => array(
-      '#markup' => l(t('Manage this mini-panel'), 'admin/structure/mini-panels/list/' . $delta . '/edit')
+      '#markup' => l(t('Manage this mini-panel'), 'admin/structure/mini-panels/list/' . $delta . '/edit'),
     ),
   );
 }
@@ -241,7 +240,6 @@ function panels_mini_get_id($name) {
 
 // ---------------------------------------------------------------------------
 // Database functions.
-
 /**
  * Create a new page with defaults appropriately set from schema.
  */
@@ -331,7 +329,7 @@ function panels_mini_load_all($reset = FALSE) {
           $dids[$mini->did] = $mini->name;
         }
         else {
-        // Translate old style titles into new titles.
+          // Translate old style titles into new titles.
           if (!empty($mini->title) && empty($mini->display->title)) {
             $mini->display->title = $mini->title;
           }
@@ -400,7 +398,7 @@ function panels_mini_delete($mini) {
 function panels_mini_export($mini, $indent = '') {
   ctools_include('export');
   $output = ctools_export_object('panels_mini', $mini, $indent);
-  // Export the primary display
+  // Export the primary display.
   $display = !empty($mini->display) ? $mini->display : panels_load_display($mini->did);
   $output .= panels_export_display($display, $indent);
   $output .= $indent . '$mini->display = $display' . ";\n";
@@ -462,7 +460,7 @@ function _panels_mini_panels_cache_get($key) {
 }
 
 /**
- * Get display edit cache for the panels mini export UI
+ * Get display edit cache for the panels mini export UI.
  *
  * The key is the second half of the key in this form:
  * panels_mini:TASK_NAME:HANDLER_NAME;

sites/all/modules/contrib/panels/panels/panels_mini/plugins/content_types/panels_mini.inc

@@ -6,7 +6,6 @@
  * need to be broken out into a .inc file, it's convenient that we do so
  * that we don't load code unnecessarily. Plus it demonstrates plugins
  * in modules other than Panels itself.
- *
  */
 
 /**
@@ -105,7 +104,7 @@ function panels_mini_panels_mini_content_type_render($subtype, $conf, $panel_arg
   $mini->display->args = $panel_args;
   $mini->display->css_id = panels_mini_get_id($subtype);
   $mini->display->owner = $mini;
-  // unique ID of this mini.
+  // Unique ID of this mini.
   $mini->display->owner->id = $mini->name;
 
   $block = new stdClass();

sites/all/modules/contrib/panels/panels/panels_mini/plugins/export_ui/panels_mini.inc

@@ -1,5 +1,9 @@
 <?php
 
+/**
+ * @file
+ */
+
 $plugin = array(
   'schema' => 'panels_mini',
   'access' => 'administer mini panels',
@@ -38,4 +42,3 @@ $plugin = array(
   ),
 
 );
-

sites/all/modules/contrib/panels/panels/panels_mini/plugins/export_ui/panels_mini_ui.class.php

@@ -1,5 +1,8 @@
 <?php
 
+/**
+ * @file
+ */
 class panels_mini_ui extends ctools_export_ui {
   function init($plugin) {
     parent::init($plugin);
@@ -62,23 +65,28 @@ class panels_mini_ui extends ctools_export_ui {
   }
 
   function list_build_row($item, &$form_state, $operations) {
-    // Set up sorting
+    // Set up sorting.
     switch ($form_state['values']['order']) {
       case 'disabled':
         $this->sorts[$item->name] = empty($item->disabled) . $item->admin_title;
         break;
+
       case 'title':
         $this->sorts[$item->name] = $item->admin_title;
         break;
+
       case 'name':
         $this->sorts[$item->name] = $item->name;
         break;
+
       case 'category':
         $this->sorts[$item->name] = ($item->category ? $item->category : t('Mini panels')) . $item->admin_title;
         break;
+
       case 'layout':
         $this->sorts[$item->name] = $item->display->layout . $item->admin_title;
         break;
+
       case 'storage':
         $this->sorts[$item->name] = $item->type . $item->admin_title;
         break;
@@ -115,7 +123,7 @@ class panels_mini_ui extends ctools_export_ui {
   }
 
   function edit_form(&$form, &$form_state) {
-    // Get the basic edit form
+    // Get the basic edit form.
     parent::edit_form($form, $form_state);
 
     // Set the admin title machine name length.
@@ -295,4 +303,5 @@ class panels_mini_ui extends ctools_export_ui {
     panels_edit_display_form_submit($form, $form_state);
     $form_state['item']->display = $form_state['display'];
   }
+
 }

sites/all/modules/contrib/panels/panels/panels_mini/plugins/panels_storage/panels_mini.inc

@@ -5,7 +5,7 @@
  * Provides a panels_storage plugin for mini panels.
  */
 
-// Plugin definition
+// Plugin definition.
 $plugin = array(
   'access callback' => 'panels_mini_panels_storage_access',
 );

sites/all/modules/contrib/panels/panels/panels_node/panels_node.info

@@ -6,9 +6,9 @@ configure = admin/structure/panels
 core = 7.x
 files[] = panels_node.module
 
-; Information added by Drupal.org packaging script on 2016-10-16
-version = "7.x-3.8"
+; Information added by Drupal.org packaging script on 2017-02-06
+version = "7.x-3.9"
 core = "7.x"
 project = "panels"
-datestamp = "1476582295"
+datestamp = "1486394388"
 

sites/all/modules/contrib/panels/panels/panels_node/panels_node.install

@@ -1,5 +1,9 @@
 <?php
 
+/**
+ * @file
+ */
+
 /**
  * Implementation of hook_schema().
  */
@@ -60,7 +64,7 @@ function panels_node_uninstall() {
  * Implements hook_update_dependencies().
  */
 function panels_node_update_dependencies() {
-  // Update 7301 requires panels storage support
+  // Update 7301 requires panels storage support.
   $dependencies['panels_node'][7301] = array(
     'panels' => 7305,
   );
@@ -69,7 +73,7 @@ function panels_node_update_dependencies() {
 }
 
 /**
- * Implementation of hook_update to handle adding a pipeline
+ * Implementation of hook_update to handle adding a pipeline.
  */
 function panels_node_update_6001() {
   $ret = array();
@@ -125,19 +129,19 @@ function panels_node_update_7301() {
  */
 function panels_node_update_7302() {
   if (!isset($sandbox['progress'])) {
-     // Initialize batch update information.
-     $sandbox['progress'] = (float)0;
-     $sandbox['current_did'] = -1;
-     $sandbox['max'] = db_query("SELECT COUNT(pd.did)
+    // Initialize batch update information.
+    $sandbox['progress'] = (float) 0;
+    $sandbox['current_did'] = -1;
+    $sandbox['max'] = db_query("SELECT COUNT(pd.did)
          FROM {panels_display} pd
            JOIN {panels_node} pn ON pn.did = pd.did
          WHERE pd.storage_type = ''")->fetchField();
-   }
+  }
 
   // Set a limit of how many rows to process per batch.
   $limit = 1000;
 
-  // Run the query
+  // Run the query.
   $result = db_query_range("SELECT pd.did, pn.nid
       FROM {panels_display} pd
         JOIN {panels_node} pn ON pn.did = pd.did

sites/all/modules/contrib/panels/panels/panels_node/panels_node.module

@@ -1,6 +1,4 @@
 <?php
-
-
 /**
  * @file panels_node.module
  *
@@ -10,8 +8,7 @@
  */
 
 // ---------------------------------------------------------------------------
-// General Drupal hooks
-
+// General Drupal hooks.
 /**
  * Implementation of hook_permission().
  */
@@ -81,7 +78,7 @@ function panels_node_menu() {
 }
 
 /**
- * Access callback to determine if a user has edit access
+ * Access callback to determine if a user has edit access.
  */
 function panels_node_edit_node($node) {
   if (!isset($node->panels_node)) {
@@ -113,8 +110,7 @@ function panels_node_add() {
 }
 
 // ---------------------------------------------------------------------------
-// Node hooks
-
+// Node hooks.
 /**
  * Implementation of hook_node_info().
  */
@@ -202,7 +198,7 @@ function panels_node_hook_form(&$node, &$form_state) {
   );
 
   // Support for different rendering pipelines
-  // Mostly borrowed from panel_context.inc
+  // Mostly borrowed from panel_context.inc.
   $pipelines = panels_get_renderer_pipelines();
 
   $options = array();
@@ -257,7 +253,7 @@ function panels_node_hook_insert(&$node) {
 
   // Special handling for nodes being imported from an export.module data dump.
   if (!empty($node->export_display)) {
-    // This works by overriding the $display set above
+    // This works by overriding the $display set above.
     eval($node->export_display);
     unset($node->export_display);
   }
@@ -336,8 +332,7 @@ function panels_node_hook_view($node, $view_mode) {
 }
 
 // ---------------------------------------------------------------------------
-// Administrative pages
-
+// Administrative pages.
 /**
  * Settings for panel nodes.
  */
@@ -347,8 +342,7 @@ function panels_node_settings() {
 }
 
 // ---------------------------------------------------------------------------
-// Meat of the Panels API; almost completely passing through to panels.module
-
+// Meat of the Panels API; almost completely passing through to panels.module.
 /**
  * Pass through to the panels layout editor.
  */
@@ -385,7 +379,7 @@ function panels_node_get_context(&$node) {
 }
 
 /**
- * Implementation of hook_export_node_alter()
+ * Implementation of hook_export_node_alter().
  *
  * Integrate with export.module for saving panel_nodes into code.
  */
@@ -423,13 +417,12 @@ function panels_node_panels_ipe_access($display) {
     // Only allow access to use the IPE if the user has 'update' access to
     // the underlying node.
     $node = $display->context['panel-node']->data;
-    return node_access('update', $node); 
+    return node_access('update', $node);
   }
 }
 
 // ---------------------------------------------------------------------------
 // Callbacks for panel caching.
-
 /**
  * Get display edit cache for a panel node being edited.
  *
@@ -451,7 +444,7 @@ function panels_node_panels_cache_get($nid) {
     $cache->display->css_id = $node->panels_node['css_id'];
     $cache->display->context = panels_node_get_context($node);
     $cache->display->cache_key = 'panels_node:' . $node->nid;
-    $cache->content_types =   panels_common_get_allowed_types('panels_node', $cache->display->context);
+    $cache->content_types = panels_common_get_allowed_types('panels_node', $cache->display->context);
     $cache->allwed_layouts = panels_common_get_allowed_layouts('panels_node');
   }
 

sites/all/modules/contrib/panels/panels/panels_node/plugins/panels_storage/panels_node.inc

@@ -5,7 +5,7 @@
  * Provides a panels_storage plugin for panels node.
  */
 
-// Plugin definition
+// Plugin definition.
 $plugin = array(
   'access callback' => 'panels_node_panels_storage_access',
 );

sites/all/modules/contrib/panels/panels/plugins/cache/simple.inc

@@ -5,7 +5,7 @@
  * Provides a simple time-based caching option for panel panes.
  */
 
-// Plugin definition
+// Plugin definition.
 $plugin = array(
   'title' => t("Simple cache"),
   'description' => t('Simple caching is a time-based cache. This is a hard limit, and once cached it will remain that way until the time limit expires.'),
@@ -128,7 +128,7 @@ function panels_simple_cache_get_id($conf, $display, $args, $contexts, $pane) {
     $id .= ':' . $language->language;
   }
 
-  if(!empty($pane->configuration['use_pager']) && !empty($_GET['page'])) {
+  if (!empty($pane->configuration['use_pager']) && !empty($_GET['page'])) {
     $id .= ':p' . check_plain($_GET['page']);
   }
 
@@ -158,4 +158,3 @@ function panels_simple_cache_settings_form($conf, $display, $pid) {
 
   return $form;
 }
-

sites/all/modules/contrib/panels/panels/plugins/display_renderers/editor.inc

@@ -1,5 +1,9 @@
 <?php
 
+/**
+ * @file
+ */
+
 $plugin = array(
   'renderer' => 'panels_renderer_editor',
 );

sites/all/modules/contrib/panels/panels/plugins/display_renderers/panels_renderer_editor.class.php

@@ -4,7 +4,6 @@
  * @file
  * Class file to control the main Panels editor.
  */
-
 class panels_renderer_editor extends panels_renderer_standard {
 
   /**
@@ -20,8 +19,10 @@ class panels_renderer_editor extends panels_renderer_standard {
    * builder that do not actually have real content.
    */
   var $no_edit_links = FALSE;
-  // -------------------------------------------------------------------------
-  // Display edit rendering.
+  // -------------------------------------------------------------------------.
+  /**
+   * Display edit rendering.
+   */
 
   function edit() {
     $form_state = array(
@@ -119,7 +120,6 @@ class panels_renderer_editor extends panels_renderer_standard {
     $buttons = $this->get_pane_links($pane, $content_type);
 
     // Render administrative buttons for the pane.
-
     $block = new stdClass();
     if (empty($content_type)) {
       $block->title = '<em>' . t('Missing content type') . '</em>';
@@ -136,7 +136,7 @@ class panels_renderer_editor extends panels_renderer_standard {
         $settings['Panels']['RegionLock'][$pane->pid] = $pane->locks['regions'];
         drupal_add_js($settings, 'setting');
       }
-      else if ($pane->locks['type'] == 'immovable') {
+      elseif ($pane->locks['type'] == 'immovable') {
         $grabber_class = 'grab-title not-grabber';
       }
     }
@@ -163,15 +163,15 @@ class panels_renderer_editor extends panels_renderer_standard {
       $output .= '<span class="buttons">' . $buttons . '</span>';
     }
     $output .= '<span class="text" title="' . check_plain($title) . '">' . $title . '</span>';
-    $output .= '</div>'; // grabber
-
+    $output .= '</div>';
+    // Grabber.
     $output .= '<div class="panel-pane-collapsible">';
     $output .= '<div class="pane-title">' . $block->title . '</div>';
     $output .= '<div class="pane-content">' . filter_xss_admin(render($block->content)) . '</div>';
-    $output .= '</div>'; // panel-pane-collapsible
-
-    $output .= '</div>'; // panel-pane
-
+    $output .= '</div>';
+    // panel-pane-collapsible.
+    $output .= '</div>';
+    // panel-pane.
     return $output;
   }
 
@@ -360,7 +360,7 @@ class panels_renderer_editor extends panels_renderer_standard {
 
     if (user_access('administer pane access')) {
       $contexts = $this->display->context;
-      // Make sure we have the logged in user context
+      // Make sure we have the logged in user context.
       if (!isset($contexts['logged-in-user'])) {
         $contexts['logged-in-user'] = ctools_access_get_loggedin_context();
       }
@@ -408,9 +408,11 @@ class panels_renderer_editor extends panels_renderer_standard {
         case 'immovable':
           $lock_method = t('Immovable');
           break;
+
         case 'regions':
           $lock_method = t('Regions');
           break;
+
         case 'none':
         default:
           $lock_method = t('No lock');
@@ -464,7 +466,7 @@ class panels_renderer_editor extends panels_renderer_standard {
     );
 
     // Allow others to add/remove links from pane context menu.
-    // Grouped by 'top', 'style', 'visibility', 'lock', 'cache' and 'bottom'
+    // Grouped by 'top', 'style', 'visibility', 'lock', 'cache' and 'bottom'.
     drupal_alter('get_pane_links', $links, $pane, $content_type);
 
     $dropdown_links = $links['top'];
@@ -499,7 +501,6 @@ class panels_renderer_editor extends panels_renderer_standard {
 
   // -----------------------------------------------------------------------
   // Display edit AJAX callbacks and helpers.
-
   /**
    * Generate a URL path for the AJAX editor.
    */
@@ -612,7 +613,7 @@ class panels_renderer_editor extends panels_renderer_standard {
     if (!empty($content_type['top level'])) {
       $category = 'root';
     }
-    else if (isset($content_type['category'])) {
+    elseif (isset($content_type['category'])) {
       if (is_array($content_type['category'])) {
         list($category, $weight) = $content_type['category'];
       }
@@ -668,7 +669,7 @@ class panels_renderer_editor extends panels_renderer_standard {
       }
     }
 
-    // Now sort
+    // Now sort.
     natcasesort($category_names);
     foreach ($category_names as $category => $name) {
       $output[$category] = $categories[$category];
@@ -733,17 +734,17 @@ class panels_renderer_editor extends panels_renderer_standard {
       $pane = $form_state['pane'];
       unset($this->cache->new_pane);
 
-      // Add the pane to the display
+      // Add the pane to the display.
       $this->display->add_pane($pane, $region);
       panels_edit_cache_set($this->cache);
 
-      // Tell the client to draw the pane
+      // Tell the client to draw the pane.
       $this->command_add_pane($pane);
 
       // Dismiss the modal.
       $this->commands[] = ctools_modal_command_dismiss();
     }
-    else if (!empty($form_state['cancel'])) {
+    elseif (!empty($form_state['cancel'])) {
       // If cancelling, return to the activity.
       list($category_key, $category) = $this->get_category($subtype);
       $this->ajax_select_content($region, $category_key);
@@ -786,14 +787,14 @@ class panels_renderer_editor extends panels_renderer_standard {
       'cancel callback' => 'panels_ajax_edit_pane_cancel',
     );
 
-    $output = ctools_content_form('edit', $form_info, $form_state, $content_type, $pane->subtype,  $subtype, $pane->configuration, $step);
+    $output = ctools_content_form('edit', $form_info, $form_state, $content_type, $pane->subtype, $subtype, $pane->configuration, $step);
 
     // If $rc is FALSE, there was no actual form.
     if ($output === FALSE || !empty($form_state['cancel'])) {
       // Dismiss the modal.
       $this->commands[] = ctools_modal_command_dismiss();
     }
-    else if (!empty($form_state['complete'])) {
+    elseif (!empty($form_state['complete'])) {
       // References get blown away with AJAX caching. This will fix that.
       $this->cache->display->content[$pid] = $form_state['pane'];
 
@@ -852,7 +853,7 @@ class panels_renderer_editor extends panels_renderer_standard {
       $conf = &$this->display->cache;
       $title = t('Cache method for this display');
     }
-    else if (!empty($this->display->content[$pid])) {
+    elseif (!empty($this->display->content[$pid])) {
       $pane = &$this->display->content[$pid];
       $subtype = ctools_content_get_subtype($pane->type, $pane->subtype);
       $conf = &$pane->cache;
@@ -896,7 +897,7 @@ class panels_renderer_editor extends panels_renderer_standard {
     else {
       $this->cache->method = $form_state['method'];
       panels_edit_cache_set($this->cache);
-      // send them to next form.
+      // Send them to next form.
       return $this->ajax_cache_settings($pid);
     }
   }
@@ -917,7 +918,7 @@ class panels_renderer_editor extends panels_renderer_standard {
       $conf = &$this->display->cache;
       $title = t('Cache settings for this display');
     }
-    else if (!empty($this->display->content[$pid])) {
+    elseif (!empty($this->display->content[$pid])) {
       $pane = &$this->display->content[$pid];
       $subtype = ctools_content_get_subtype($pane->type, $pane->subtype);
 
@@ -979,7 +980,8 @@ class panels_renderer_editor extends panels_renderer_standard {
         break;
 
       case 'region':
-        $style = isset($this->display->panel_settings[$pid]['style']) ? $this->display->panel_settings[$pid]['style'] : '-1'; // -1 signifies to use the default setting.
+        $style = isset($this->display->panel_settings[$pid]['style']) ? $this->display->panel_settings[$pid]['style'] : '-1';
+        // -1 signifies to use the default setting.
         $title = t('Panel style for region "!region"', array('!region' => $this->plugins['layout']['regions'][$pid]));
         break;
 
@@ -1032,7 +1034,7 @@ class panels_renderer_editor extends panels_renderer_standard {
       }
 
       // If there's no settings form, just change the style and exit.
-      switch($type) {
+      switch ($type) {
         case 'display':
           $this->display->panel_settings['style'] = $form_state['style'];
           if (isset($this->display->panel_settings['style_settings']['default'])) {
@@ -1062,7 +1064,7 @@ class panels_renderer_editor extends panels_renderer_standard {
       if ($type == 'pane') {
         $this->command_update_pane($pane);
       }
-      else if ($type == 'region') {
+      elseif ($type == 'region') {
         $this->command_update_region_links($pid);
       }
       else {
@@ -1075,7 +1077,7 @@ class panels_renderer_editor extends panels_renderer_standard {
         panels_edit_cache_set($this->cache);
       }
 
-      // send them to next form.
+      // Send them to next form.
       return $this->ajax_style_settings($type, $pid);
     }
   }
@@ -1214,11 +1216,11 @@ class panels_renderer_editor extends panels_renderer_standard {
     }
 
     // Copy settings from form state back into the cache.
-    if(!empty($form_state['values']['settings'])) {
+    if (!empty($form_state['values']['settings'])) {
       if ($type == 'pane') {
         $this->cache->display->content[$pid]->style['settings'] = $form_state['values']['settings'];
       }
-      else if($type == 'region') {
+      elseif ($type == 'region') {
         $this->cache->display->panel_settings['style_settings'][$pid] = $form_state['values']['settings'];
       }
     }
@@ -1230,7 +1232,7 @@ class panels_renderer_editor extends panels_renderer_standard {
     if ($type == 'pane') {
       $this->command_update_pane($pane);
     }
-    else if ($type == 'region') {
+    elseif ($type == 'region') {
       $this->command_update_region_links($pid);
     }
     else {
@@ -1354,12 +1356,12 @@ class panels_renderer_editor extends panels_renderer_standard {
 
     $output = ctools_modal_form_wrapper('panels_edit_add_access_test_form', $form_state);
     if (!empty($form_state['executed'])) {
-      // Set up the plugin in cache
+      // Set up the plugin in cache.
       $plugin = ctools_get_access_plugin($form_state['values']['type']);
       $this->cache->new_plugin = ctools_access_new_test($plugin);
       panels_edit_cache_set($this->cache);
 
-      // go to the next step.
+      // Go to the next step.
       return $this->ajax_access_configure_test($pid, 'add');
     }
 
@@ -1387,7 +1389,7 @@ class panels_renderer_editor extends panels_renderer_standard {
       $pane->access['plugins'][] = $this->cache->new_plugin;
       $id = max(array_keys($pane->access['plugins']));
     }
-    else if (empty($pane->access['plugins'][$id])) {
+    elseif (empty($pane->access['plugins'][$id])) {
       ctools_modal_render(t('Error'), t('Invalid test id.'));
     }
 
@@ -1407,7 +1409,7 @@ class panels_renderer_editor extends panels_renderer_standard {
       return;
     }
 
-    // Unset the new plugin
+    // Unset the new plugin.
     if (isset($this->cache->new_plugin)) {
       unset($this->cache->new_plugin);
     }
@@ -1483,7 +1485,6 @@ class panels_renderer_editor extends panels_renderer_standard {
   //
   // These are used to make sure that child implementations can control their
   // own AJAX commands as needed.
-
   /**
    * Create a command array to redraw a pane.
    */
@@ -1527,6 +1528,7 @@ class panels_renderer_editor extends panels_renderer_standard {
   function command_update_region_links($id) {
     $this->commands[] = ajax_command_replace('.panels-region-links-' . $id, $this->get_region_links($id));
   }
+
 }
 
 /**
@@ -1559,10 +1561,9 @@ function panels_ajax_edit_pane_cancel(&$form_state) {
 }
 
 // --------------------------------------------------------------------------
-// Forms for the editor object
-
+// Forms for the editor object.
 /**
- * Choose cache method form
+ * Choose cache method form.
  */
 function panels_edit_cache_method_form($form, &$form_state) {
   ctools_form_include($form_state, 'plugins', 'panels');
@@ -1612,7 +1613,7 @@ function panels_edit_cache_method_form_submit($form, &$form_state) {
 }
 
 /**
- * Cache settings form
+ * Cache settings form.
  */
 function panels_edit_cache_settings_form($form, &$form_state) {
   ctools_form_include($form_state, 'plugins', 'panels');
@@ -1674,7 +1675,7 @@ function panels_edit_cache_settings_form_submit($form, &$form_state) {
 }
 
 /**
- * Choose style form
+ * Choose style form.
  */
 function panels_edit_style_type_form($form, &$form_state) {
   ctools_form_include($form_state, 'plugins', 'panels');
@@ -1726,7 +1727,7 @@ function panels_edit_style_type_form_submit($form, &$form_state) {
 }
 
 /**
- * Style settings form
+ * Style settings form.
  */
 function panels_edit_style_settings_form($form, &$form_state) {
   ctools_form_include($form_state, 'plugins', 'panels');
@@ -1755,7 +1756,6 @@ function panels_edit_style_settings_form($form, &$form_state) {
     '#value' => t('Save'),
   );
 
-
   // Need a cancel button since the style cache can persist and impact the wrong
   // pane (or region, or display).
   $form['cancel_style'] = array(
@@ -2038,7 +2038,7 @@ function panels_edit_configure_access_test_form($form, &$form_state) {
 }
 
 /**
- * Validate handler for visibility rule settings
+ * Validate handler for visibility rule settings.
  */
 function panels_edit_configure_access_test_form_validate(&$form, &$form_state) {
   if (!empty($form_state['clicked_button']['#remove'])) {
@@ -2051,7 +2051,7 @@ function panels_edit_configure_access_test_form_validate(&$form, &$form_state) {
 }
 
 /**
- * Submit handler for visibility rule settings
+ * Submit handler for visibility rule settings.
  */
 function panels_edit_configure_access_test_form_submit(&$form, &$form_state) {
   if (!empty($form_state['clicked_button']['#remove'])) {
@@ -2069,4 +2069,3 @@ function panels_edit_configure_access_test_form_submit(&$form, &$form_state) {
   }
   $form_state['test']['not'] = !empty($form_state['values']['not']);
 }
-

sites/all/modules/contrib/panels/panels/plugins/display_renderers/panels_renderer_simple.class.php

@@ -23,10 +23,11 @@ class panels_renderer_simple extends panels_renderer_standard {
   }
 
   function render_panes() {
-    // NOP
+    // NOP.
   }
 
   function prepare($external_settings = NULL) {
     $this->prep_run = TRUE;
   }
+
 }

sites/all/modules/contrib/panels/panels/plugins/display_renderers/panels_renderer_standard.class.php

@@ -1,5 +1,9 @@
 <?php
 
+/**
+ * @file
+ */
+
 /**
  * The standard render pipeline for a Panels display object.
  *
@@ -48,6 +52,9 @@
  * with some exceptions (@see panels_renderer_legacy for details). The approach
  * here differs primarily in its friendliness to tweaking in subclasses.
  */
+/**
+ *
+ */
 class panels_renderer_standard {
   /**
    * The fully-loaded Panels display object that is to be rendered. "Fully
@@ -209,9 +216,9 @@ class panels_renderer_standard {
    * method via parent::prepare(), or manually set $this->prep_run = TRUE.
    *
    * @param mixed $external_settings
-   *  An optional parameter allowing external code to pass in additional
-   *  settings for use in the preparation process. Not used in the default
-   *  renderer, but included for interface consistency.
+   *   An optional parameter allowing external code to pass in additional
+   *   settings for use in the preparation process. Not used in the default
+   *   renderer, but included for interface consistency.
    */
   function prepare($external_settings = NULL) {
     $this->prepare_panes($this->display->content);
@@ -232,22 +239,24 @@ class panels_renderer_standard {
    * regularly make additions to the set of panes that will be rendered.
    *
    * @param array $panes
-   *  An associative array of pane data (stdClass objects), keyed on pane id.
+   *   An associative array of pane data (stdClass objects), keyed on pane id.
+   *
    * @return array
    *  An associative array of panes to be rendered, keyed on pane id and sorted
    *  into proper rendering order.
    */
   function prepare_panes($panes) {
     ctools_include('content');
-    // Use local variables as writing to them is very slightly faster
+    // Use local variables as writing to them is very slightly faster.
     $first = $normal = $last = array();
 
-    // Prepare the list of panes to be rendered
+    // Prepare the list of panes to be rendered.
     foreach ($panes as $pid => $pane) {
       if (empty($this->admin)) {
-        // TODO remove in 7.x and ensure the upgrade path weeds out any stragglers; it's been long enough
-        $pane->shown = !empty($pane->shown); // guarantee this field exists.
-        // If this pane is not visible to the user, skip out and do the next one
+        // TODO remove in 7.x and ensure the upgrade path weeds out any stragglers; it's been long enough.
+        $pane->shown = !empty($pane->shown);
+        // Guarantee this field exists.
+        // If this pane is not visible to the user, skip out and do the next one.
         if (!$pane->shown || !panels_pane_access($pane, $this->display)) {
           continue;
         }
@@ -272,7 +281,7 @@ class panels_renderer_standard {
       // If it wants to render first, add it to the $first array. This is used
       // by panes that need to do some processing before other panes are
       // rendered.
-      else if (!empty($content_type['render first'])) {
+      elseif (!empty($content_type['render first'])) {
         $first[$pid] = $pane;
       }
       // Otherwise, render it in the normal order.
@@ -318,6 +327,7 @@ class panels_renderer_standard {
    * @param array $settings
    *   All known region style settings, including both the top-level display's
    *   settings (if any) and all region-specific settings (if any).
+   *
    * @return array
    *   An array of regions prepared for rendering.
    */
@@ -497,9 +507,10 @@ class panels_renderer_standard {
       case 'standard':
         drupal_add_css($filename);
         break;
+
       case 'inline':
         $url = base_path() . $filename;
-        $this->prefix .= '<link type="text/css" rel="stylesheet" href="' . file_create_url($url) . '" />'."\n";
+        $this->prefix .= '<link type="text/css" rel="stylesheet" href="' . file_create_url($url) . '" />' . "\n";
         break;
     }
   }
@@ -533,8 +544,8 @@ class panels_renderer_standard {
    * an individual pane can be bubbled up to take over the title for the entire
    * display.
    *
-   * @param stdClass $pane
-   *  A Panels pane object, as loaded from the database.
+   * @param object $pane
+   *   A Panels pane object, as loaded from the database.
    */
   function render_pane(&$pane) {
     module_invoke_all('panels_pane_prerender', $pane);
@@ -567,7 +578,7 @@ class panels_renderer_standard {
         }
       }
 
-      // fallback
+      // Fallback.
       return theme('panels_pane', array('content' => $content, 'pane' => $pane, 'display' => $this->display));
     }
   }
@@ -578,8 +589,9 @@ class panels_renderer_standard {
    * This method retrieves pane content and produces a ready-to-render content
    * object. It also manages pane-specific caching.
    *
-   * @param stdClass $pane
+   * @param object $pane
    *   A Panels pane object, as loaded from the database.
+   *
    * @return stdClass $content
    *   A renderable object, containing a subject, content, etc. Based on the
    *   renderable objects used by the block system.
@@ -693,4 +705,5 @@ class panels_renderer_standard {
     $output = theme($style['render region'], array('display' => $this->display, 'owner_id' => $owner_id, 'panes' => $panes, 'settings' => $style_settings, 'region_id' => $region_id, 'style' => $style));
     return $output;
   }
+
 }

sites/all/modules/contrib/panels/panels/plugins/display_renderers/simple.inc

@@ -1,5 +1,6 @@
 <?php
 /**
+ * @file
  * Create a simple renderer plugin that renders a layout but the content is
  * already rendered, not in panes.
  */

sites/all/modules/contrib/panels/panels/plugins/display_renderers/standard.inc

@@ -1,5 +1,9 @@
 <?php
 
+/**
+ * @file
+ */
+
 $plugin = array(
   'renderer' => 'panels_renderer_standard',
 );

sites/all/modules/contrib/panels/panels/plugins/export_ui/panels_layouts.inc

@@ -1,5 +1,9 @@
 <?php
 
+/**
+ * @file
+ */
+
 $plugin = array(
   'schema' => 'panels_layout',
   'access' => 'administer panels layouts',
@@ -20,4 +24,3 @@ $plugin = array(
     'class' => 'panels_layouts_ui',
   ),
 );
-

sites/all/modules/contrib/panels/panels/plugins/export_ui/panels_layouts_ui.class.php

@@ -4,7 +4,6 @@
  * @file
  * Contains the administrative UI for reusable layouts.
  */
-
 class panels_layouts_ui extends ctools_export_ui {
   var $lipsum = "Lorem ipsum dolor sit amet, consectetur adipiscing elit. Nam egestas congue nibh, vel dictum ante posuere vitae. Cras gravida massa tempor metus eleifend sed elementum tortor scelerisque. Vivamus egestas, tortor quis luctus tristique, sem velit adipiscing risus, et tempus enim felis in massa. Morbi viverra, nisl quis rhoncus imperdiet, turpis massa vestibulum turpis, egestas faucibus nibh metus vel nunc. In hac habitasse platea dictumst. Nunc sit amet nisi quis ipsum tincidunt semper. Donec ac urna enim, et placerat arcu. Morbi eu laoreet justo. Nullam nec velit eu neque mattis pulvinar sed non libero. Sed sed vulputate erat. Fusce sit amet dui nibh.";
 
@@ -18,7 +17,7 @@ class panels_layouts_ui extends ctools_export_ui {
     // Change the item to a tab on the Panels page.
     $this->plugin['menu']['items']['list callback']['type'] = MENU_LOCAL_TASK;
 
-    // Establish a base for adding plugins
+    // Establish a base for adding plugins.
     $base = $this->plugin['menu']['items']['add'];
     // Remove the default 'add' menu item.
     unset($this->plugin['menu']['items']['add']);
@@ -27,7 +26,7 @@ class panels_layouts_ui extends ctools_export_ui {
     $this->builders = panels_get_layout_builders();
     asort($this->builders);
     foreach ($this->builders as $name => $builder) {
-      // Create a new menu item for the builder
+      // Create a new menu item for the builder.
       $item = $base;
       $item['title'] = !empty($builder['builder tab title']) ? $builder['builder tab title'] : 'Add ' . $builder['title'];
       $item['page arguments'][] = $name;
@@ -78,6 +77,8 @@ class panels_layouts_ui extends ctools_export_ui {
       $display->layout_settings = $form_state['item']->settings;
       $display->cache_key = $cache_key;
       $display->editing_layout = TRUE;
+      $display->storage_type = 'panels_layouts_ui';
+      $display->storage_id = 'panels_layouts_ui';
 
       $cache->display = $display;
       $cache->content_types = $content_types;
@@ -193,23 +194,28 @@ class panels_layouts_ui extends ctools_export_ui {
   }
 
   function list_build_row($item, &$form_state, $operations) {
-    // Set up sorting
+    // Set up sorting.
     switch ($form_state['values']['order']) {
       case 'disabled':
         $this->sorts[$item->name] = empty($item->disabled) . $item->admin_title;
         break;
+
       case 'title':
         $this->sorts[$item->name] = $item->admin_title;
         break;
+
       case 'name':
         $this->sorts[$item->name] = $item->name;
         break;
+
       case 'category':
         $this->sorts[$item->name] = ($item->category ? $item->category : t('Miscellaneous')) . $item->admin_title;
         break;
+
       case 'plugin':
         $this->sorts[$item->name] = $item->plugin;
         break;
+
       case 'storage':
         $this->sorts[$item->name] = $item->type . $item->admin_title;
         break;
@@ -242,4 +248,5 @@ class panels_layouts_ui extends ctools_export_ui {
       array('data' => t('Operations'), 'class' => array('ctools-export-ui-operations')),
     );
   }
+
 }

sites/all/modules/contrib/panels/panels/plugins/layouts/flexible/flexible-admin.css

@@ -1,4 +1,3 @@
-
 #panels-dnd-main .panel-flexible-edit-layout div.panels-display .pane-add-link,
 .panel-flexible-edit-layout .panel-pane {
   display: none;
@@ -54,8 +53,8 @@
   float: left;
   margin-left: -7px;
   margin-right: -6px;
-	cursor: e-resize;	/* in case col-resize isn't supported */
-	cursor: col-resize;
+  cursor: e-resize;    /* in case col-resize isn't supported */
+  cursor: col-resize;
   height: 30px;
   position: relative;
   z-index: 1;
@@ -84,4 +83,3 @@
 #panels-edit-display .helperclass {
   margin: .5em;
 }
-

sites/all/modules/contrib/panels/panels/plugins/layouts/flexible/flexible.css

@@ -1,4 +1,3 @@
-
 .panel-flexible .panel-separator {
   margin: 0 0 1em 0;
 }

sites/all/modules/contrib/panels/panels/plugins/layouts/flexible/flexible.inc

@@ -1,9 +1,14 @@
 <?php
 
 /**
- * Implementation of hook_panels_layouts()
+ * @file
+ * Flexible layout plugin.
  */
-// Plugin definition
+
+/**
+ * Implementation of hook_panels_layouts().
+ */
+// Plugin definition.
 $plugin = array(
   'title' => t('Flexible'),
   'category' => t('Builders'),
@@ -18,14 +23,13 @@ $plugin = array(
   'regions function' => 'panels_flexible_panels',
   'hook menu' => 'panels_flexible_menu',
 
-  // Reuisable layout Builder specific directives
+  // Reusable layout Builder specific directives.
   'builder' => TRUE,
-  'builder tab title' => 'Add flexible layout', // menu so translated elsewhere
-
+  'builder tab title' => 'Add flexible layout',
   'get child' => 'panels_flexible_get_sublayout',
   'get children' => 'panels_flexible_get_sublayouts',
 
-  // Define ajax callbacks
+  // Define ajax callbacks.
   'ajax' => array(
     'settings' => 'panels_ajax_flexible_edit_settings',
     'add' => 'panels_ajax_flexible_edit_add',
@@ -79,9 +83,16 @@ function panels_flexible_get_sublayouts($plugin, $layout_name) {
 }
 
 /**
+ * Flexible panel settings converter.
+ *
  * Convert settings from old style to new, or provide defaults for
  * empty settings.
- * @param <type> $settings
+ *
+ * @param array $settings
+ *   Drupal settings for the layout.
+ *
+ * @return null
+ *   Nothing to return.
  */
 function panels_flexible_convert_settings(&$settings, &$layout) {
   // This indicates that this is a layout that they used the checkbox
@@ -99,7 +110,7 @@ function panels_flexible_convert_settings(&$settings, &$layout) {
   }
 
   if (empty($settings)) {
-    // set up a default
+    // Set up a default.
     $settings = array(
       'items' => array(
         // The 'canvas' is a special row that does not get rendered
@@ -133,7 +144,7 @@ function panels_flexible_convert_settings(&$settings, &$layout) {
       ),
     );
   }
-  else if (!isset($settings['items'])) {
+  elseif (!isset($settings['items'])) {
     // Convert an old style flexible to a new style flexible.
     $old = $settings;
     $settings = array();
@@ -143,7 +154,7 @@ function panels_flexible_convert_settings(&$settings, &$layout) {
       'children' => array(),
       'parent' => NULL,
     );
-    // add the left sidebar column, row and region if it exists.
+    // Add the left sidebar column, row and region if it exists.
     if (!empty($old['sidebars']['left'])) {
       $settings['items']['canvas']['children'][] = 'sidebar-left';
       $settings['items']['sidebar-left'] = array(
@@ -205,28 +216,28 @@ function panels_flexible_convert_settings(&$settings, &$layout) {
 
     // Add rows and regions.
     for ($row = 1; $row <= intval($old['rows']); $row++) {
-      // Create entry for the row
+      // Create entry for the row:
       $settings['items']["row_$row"] = array(
         'type' => 'row',
         'contains' => 'region',
         'children' => array(),
         'parent' => 'main',
       );
-      // Add the row to the parent's children
+      // Add the row to the parent's children:
       $settings['items']['main']['children'][] = "row_$row";
 
       for ($col = 1; $col <= intval($old["row_$row"]['columns']); $col++) {
-        // Create entry for the region
+        // Create entry for the region:
         $settings['items']["row_${row}_$col"] = array(
           'type' => 'region',
           'width' => $old["row_$row"]["width_$col"],
           'width_type' => '%',
           'parent' => "row_$row",
         );
-        // Add entry for the region to the row's children
+        // Add entry for the region to the row's children:
         $settings['items']["row_$row"]['children'][] = "row_${row}_$col";
 
-        // Apply the proper title to the region
+        // Apply the proper title to the region:
         if (!empty($old["row_$row"]['names'][$col - 1])) {
           $settings['items']["row_${row}_$col"]['title'] = $old["row_$row"]['names'][$col - 1];
         }
@@ -236,7 +247,7 @@ function panels_flexible_convert_settings(&$settings, &$layout) {
       }
     }
   }
-  else if (isset($settings['canvas'])) {
+  elseif (isset($settings['canvas'])) {
     // Convert the old 'canvas' to the new canvas row.
     $settings['items']['canvas'] = array(
       'type' => 'row',
@@ -259,7 +270,7 @@ function panels_flexible_panels($display, $settings, $layout) {
     if (!isset($item['type'])) {
       unset($items[$id]);
     }
-    else if ($item['type'] == 'region') {
+    elseif ($item['type'] == 'region') {
       $items[$id] = $item['title'];
     }
   }
@@ -276,13 +287,13 @@ function panels_flexible_panels($display, $settings, $layout) {
  * @todo Convert the functions to methods and make this properly OO.
  */
 function panels_flexible_create_renderer($admin, $css_id, $content, $settings, &$display, $layout, $handler) {
-  $renderer = new stdClass;
+  $renderer = new stdClass();
   $renderer->settings = $settings;
   $renderer->content = $content;
   $renderer->css_id = $css_id;
   $renderer->did = &$display->did;
   if ($admin) {
-    // always scale in admin mode.
+    // Always scale in admin mode.
     $renderer->scale_base = 99.0;
   }
   else {
@@ -325,7 +336,6 @@ function panels_flexible_create_renderer($admin, $css_id, $content, $settings, &
   $renderer->row_separation = !empty($settings['items']['canvas']['row_separation']) ? $settings['items']['canvas']['row_separation'] : '0.5em';
 
   // Make some appended classes so it's easier to reference them.
-
   $renderer->base['column'] = $renderer->item_class['column'] . '-' . $renderer->base_class;
   $renderer->base['row']    = $renderer->item_class['row'] . '-' . $renderer->base_class;
   $renderer->base['region'] = $renderer->item_class['region'] . '-' . $renderer->base_class;
@@ -386,7 +396,7 @@ function theme_panels_flexible($vars) {
   }
 
   // Also store the CSS on the display in case the live preview or something
-  // needs it
+  // needs it.
   $display->add_css = $css;
 
   $output = "<div class=\"panel-flexible " . $renderer->base['canvas'] . " clearfix\" $renderer->id_str>\n";
@@ -394,7 +404,7 @@ function theme_panels_flexible($vars) {
 
   $output .= panels_flexible_render_items($renderer, $settings['items']['canvas']['children'], $renderer->base['canvas']);
 
-  // Wrap the whole thing up nice and snug
+  // Wrap the whole thing up nice and snug.
   $output .= "</div>\n</div>\n";
 
   return $output;
@@ -443,7 +453,7 @@ function theme_panels_flexible_admin($vars) {
   $content = panels_flexible_render_items($renderer, $settings['items']['canvas']['children'], $renderer->base['row'] . '-canvas');
   $output .= panels_flexible_render_item($renderer, $settings['items']['canvas'], $content, 'canvas', 0, 0, TRUE);
 
-  // Wrap the whole thing up nice and snug
+  // Wrap the whole thing up nice and snug.
   $output .= "</div>\n</div>\n";
 
   drupal_add_js($layout['path'] . '/flexible-admin.js');
@@ -464,7 +474,7 @@ function panels_flexible_render_items($renderer, $list, $owner_id) {
     $item = $renderer->settings['items'][$id];
     $location = isset($renderer->positions[$id]) ? $renderer->positions[$id] : 'middle';
 
-    if ($renderer->admin && $item['type'] != 'row' && $prev ) {
+    if ($renderer->admin && $item['type'] != 'row' && $prev) {
       $groups[$location] .= panels_flexible_render_splitter($renderer, $prev, $id);
     }
 
@@ -475,12 +485,14 @@ function panels_flexible_render_items($renderer, $list, $owner_id) {
           $groups[$location] .= panels_flexible_render_item($renderer, $item, $content, $id, $position, $max);
         }
         break;
+
       case 'row':
         $content = panels_flexible_render_items($renderer, $item['children'], $renderer->base['row'] . '-' . $id);
         if (empty($renderer->settings['items'][$id]['hide_empty']) || trim($content)) {
           $groups[$location] .= panels_flexible_render_item($renderer, $item, $content, $id, $position, $max, TRUE);
         }
         break;
+
       case 'region':
         if (empty($renderer->settings['items'][$id]['hide_empty'])) {
           $content = isset($renderer->content[$id]) ? $renderer->content[$id] : "&nbsp;";
@@ -611,7 +623,7 @@ function panels_flexible_render_splitter($renderer, $left_id, $right_id) {
   $output = '<div tabindex="0"
     class="panels-flexible-splitter flexible-splitter-for-' . $left_class . '">';
 
-  // Name the left object
+  // Name the left object:
   $output .= '<span class="panels-flexible-splitter-left">';
   $output .= '.' . $left_class;
   $output .= '</span>';
@@ -632,7 +644,7 @@ function panels_flexible_render_splitter($renderer, $left_id, $right_id) {
   $output .= $left['width_type'];
   $output .= '</span>';
 
-  // Name the right object
+  // Name the right object:
   $output .= '<span class="panels-flexible-splitter-right">';
   $output .= '.' . $right_class;
   $output .= '</span>';
@@ -677,7 +689,7 @@ function panels_flexible_render_item_links($renderer, $id, $item) {
       $add2 = t('Add row to bottom');
     }
   }
-  else if ($item['type'] == 'row') {
+  elseif ($item['type'] == 'row') {
     if ($id == 'canvas') {
       $title = t('Canvas');
       $settings = t('Canvas settings');
@@ -697,7 +709,7 @@ function panels_flexible_render_item_links($renderer, $id, $item) {
       $add2 = $item['contains'] == 'region' ? t('Add region to right') : t('Add column to right');
     }
   }
-  else if ($item['type'] == 'region') {
+  elseif ($item['type'] == 'region') {
     $title = t('Region');
     $settings = t('Region settings');
     $remove = t('Remove region');
@@ -757,7 +769,7 @@ function panels_flexible_render_css($renderer) {
 function panels_flexible_render_css_group($renderer, $list, $owner_id, $type, $id) {
   $css = array();
 
-  // Start off with some generic CSS to properly pad regions
+  // Start off with some generic CSS to properly pad regions.
   $css[$owner_id . ' .' . $renderer->item_class['region']] = array(
     'padding' => '0',
   );
@@ -792,7 +804,7 @@ function panels_flexible_render_css_group($renderer, $list, $owner_id, $type, $i
     'padding-right' => '0',
   );
 
-  // And properly pad rows too
+  // And properly pad rows too:
   $css[$owner_id . ' .' . $renderer->item_class['row']] = array(
     'padding' => '0 0 ' . $renderer->row_separation . ' 0',
     'margin' => '0',
@@ -818,7 +830,6 @@ function panels_flexible_get_css_group(&$css, $renderer, $list, $owner_id, $type
   if ($type != 'row') {
     // Go through our items and break up into right/center/right groups so we
     // can figure out our offsets.
-
     // right == any items on the right that are 'fixed'.
     // middle == all fluid items.
     // right == any items on the right that are 'fixed'.
@@ -827,7 +838,7 @@ function panels_flexible_get_css_group(&$css, $renderer, $list, $owner_id, $type
     $current = 'left';
     foreach ($list as $id) {
       if ($renderer->settings['items'][$id]['width_type'] == 'px') {
-        // fixed
+        // Fixed:
         if ($current == 'left') {
           $left[] = $id;
           $renderer->positions[$id] = 'left';
@@ -841,14 +852,14 @@ function panels_flexible_get_css_group(&$css, $renderer, $list, $owner_id, $type
         }
       }
       else {
-        // fluid
+        // Fluid:
         if ($current != 'right') {
           $current = 'middle';
           $middle[] = $id;
           $renderer->positions[$id] = 'middle';
           $middle_total += $renderer->settings['items'][$id]['width'];
         }
-        // fall through: if current is 'right' and we ran into a 'fluid' then
+        // Fall through: if current is 'right' and we ran into a 'fluid' then
         // it gets *dropped* because that is invalid.
       }
     }
@@ -903,7 +914,7 @@ function panels_flexible_get_css_group(&$css, $renderer, $list, $owner_id, $type
       $css["$owner_id-inside"]['padding-left'] = '0px';
       if ($renderer->admin || count($middle)) {
         $css["$owner_id-middle"]['margin-left'] = $left_total . 'px';
-        // IE hack
+        // IE hack!
         $css["* html $owner_id-left"]['left'] = $left_total . "px";
         // Make this one very specific to the admin CSS so that preview
         // does not stomp it.
@@ -912,7 +923,7 @@ function panels_flexible_get_css_group(&$css, $renderer, $list, $owner_id, $type
       else {
         $css["$owner_id-inside"]['margin-left'] = '-' . $left_total . 'px';
         $css["$owner_id-inside"]['padding-left'] = $left_total . 'px';
-        // IE hack
+        // IE hack!
         $css["* html $owner_id-inside"]['left'] = $left_total . "px";
       }
     }
@@ -958,8 +969,10 @@ function panels_flexible_get_css_group(&$css, $renderer, $list, $owner_id, $type
 /**
  * AJAX responder to edit flexible settings for an item.
  *
- * $handler object
+ * @param object $handler
  *   The display renderer handler object.
+ * @param mixed $id
+ *   Id for the panel.
  */
 function panels_ajax_flexible_edit_settings($handler, $id) {
   $settings = &$handler->display->layout_settings;
@@ -976,11 +989,11 @@ function panels_ajax_flexible_edit_settings($handler, $id) {
     $siblings = $settings['items'][$item['parent']]['children'];
   }
 
-
   switch ($item['type']) {
     case 'column':
       $title = t('Configure column');
       break;
+
     case 'row':
       if ($id == 'canvas') {
         $title = t('Configure canvas');
@@ -989,6 +1002,7 @@ function panels_ajax_flexible_edit_settings($handler, $id) {
         $title = t('Configure row');
       }
       break;
+
     case 'region':
       $title = t('Configure region');
       break;
@@ -1026,9 +1040,9 @@ function panels_ajax_flexible_edit_settings($handler, $id) {
     $output[] = ajax_command_replace('.flexible-links-' . $id,
       panels_flexible_render_item_links($renderer, $id, $item));
 
-    // If editing the canvas, reset the CSS width
+    // If editing the canvas, reset the CSS width.
     if ($id == 'canvas') {
-      // update canvas CSS.
+      // Update canvas CSS.
       $css = array(
         '.' . $renderer->item_class['column'] . '-inside' => array(
           'padding-left' => $renderer->column_separation,
@@ -1061,9 +1075,6 @@ function panels_ajax_flexible_edit_settings($handler, $id) {
 
 /**
  * Configure a row, column or region on the flexible page.
- *
- * @param <type> $form_state
- * @return <type>
  */
 function panels_flexible_config_item_form($form, &$form_state) {
   $display = &$form_state['display'];
@@ -1162,8 +1173,9 @@ function panels_flexible_config_item_form($form, &$form_state) {
         if ($sibling == $id) {
           $current = 'right';
         }
-        else if ($settings['items'][$sibling]['width_type'] == '%') {
-          $$current = TRUE; // Indirection.
+        elseif ($settings['items'][$sibling]['width_type'] == '%') {
+          // Indirection.
+          $$current = TRUE;
         }
       }
 
@@ -1234,7 +1246,7 @@ function panels_flexible_config_item_form_submit(&$form, &$form_state) {
     $item['region_separation'] = $form_state['values']['region_separation'];
     $item['row_separation'] = $form_state['values']['row_separation'];
   }
-  else if ($item['type'] != 'row') {
+  elseif ($item['type'] != 'row') {
     $item['width_type'] = $form_state['values']['width_type'];
   }
   else {
@@ -1270,6 +1282,7 @@ function panels_ajax_flexible_edit_add($handler, $id, $location = 'left') {
         'parent' => $id,
       );
       break;
+
     case 'row':
       switch ($parent['contains']) {
         case 'region':
@@ -1282,6 +1295,7 @@ function panels_ajax_flexible_edit_add($handler, $id, $location = 'left') {
             'parent' => $id,
           );
           break;
+
         case 'column':
           $title = $location == 'left' ? t('Add column to left') : t('Add column to right');
           $item = array(
@@ -1295,6 +1309,7 @@ function panels_ajax_flexible_edit_add($handler, $id, $location = 'left') {
       }
       // Create the new item with defaults.
       break;
+
     case 'region':
       // Cannot add items to regions.
       break;
@@ -1344,8 +1359,8 @@ function panels_ajax_flexible_edit_add($handler, $id, $location = 'left') {
 
     }
 
-    // render the item
-    $parent_class =  $renderer->base[$parent['type']] . '-' . $id;
+    // Render the item.
+    $parent_class = $renderer->base[$parent['type']] . '-' . $id;
     $item_output = panels_flexible_render_item($renderer, $item, $content, $form_state['key'], 0, 0, $item['type'] == 'row');
 
     // Get all the CSS necessary for the entire row (as width adjustments may
@@ -1364,22 +1379,24 @@ function panels_ajax_flexible_edit_add($handler, $id, $location = 'left') {
           $item_output .= panels_flexible_render_splitter($renderer, $form_state['key'], $form_state['sibling']);
           $output[] = ajax_command_prepend('#panels-dnd-main .' . $parent_class . '-left', $item_output);
         }
-        else if ($location == 'right') {
+        elseif ($location == 'right') {
           // If we are adding to the right side of the left box, there is
           // a splitter that we have to remove; then we add our box normally,
           // and then add a new splitter for just our guy.
           $output[] = ajax_command_remove('panels-flexible-splitter-for-' . $renderer->base[$item['type']] . '-' . $form_state['key']);
-          $item_output = panels_flexible_render_splitter($renderer, $form_state['sibling'], $form_state['key']) .  $item_output;
+          $item_output = panels_flexible_render_splitter($renderer, $form_state['sibling'], $form_state['key']) . $item_output;
           $item_output .= panels_flexible_render_splitter($renderer, $form_state['key'], NULL);
           $output[] = ajax_command_append('#panels-dnd-main .' . $parent_class . '-left', $item_output);
         }
         break;
+
       case 'right':
         if (!empty($form_state['sibling'])) {
-          $item_output = panels_flexible_render_splitter($renderer, $form_state['sibling'], $form_state['key']) .  $item_output;
+          $item_output = panels_flexible_render_splitter($renderer, $form_state['sibling'], $form_state['key']) . $item_output;
         }
         $output[] = ajax_command_append('#panels-dnd-main .' . $parent_class . '-right', $item_output);
         break;
+
       case 'middle':
         if ($location == 'left') {
           if (!empty($form_state['sibling'])) {
@@ -1389,7 +1406,7 @@ function panels_ajax_flexible_edit_add($handler, $id, $location = 'left') {
         }
         else {
           if (!empty($form_state['sibling'])) {
-            $item_output = panels_flexible_render_splitter($renderer, $form_state['sibling'], $form_state['key']) .  $item_output;
+            $item_output = panels_flexible_render_splitter($renderer, $form_state['sibling'], $form_state['key']) . $item_output;
           }
           $output[] = ajax_command_append('#panels-dnd-main .' . $parent_class . '-middle', $item_output);
         }
@@ -1429,8 +1446,6 @@ function panels_ajax_flexible_edit_add($handler, $id, $location = 'left') {
 }
 /**
  * Form to add a row, column or region to a flexible layout.
- * @param <type> $form_state
- * @return <type>
  */
 function panels_flexible_add_item_form($form, &$form_state) {
   $display = &$form_state['display'];
@@ -1543,7 +1558,7 @@ function panels_flexible_add_item_form_submit(&$form, &$form_state) {
   $item['hide_empty'] = $form_state['values']['hide_empty'];
 
   if ($item['type'] == 'region') {
-    // derive the region key from the title
+    // Derive the region key from the title.
     $key = preg_replace("/[^a-z0-9]/", '_', drupal_strtolower($item['title']));
     while (isset($settings['items'][$key])) {
       $key .= '_';
@@ -1569,7 +1584,7 @@ function panels_flexible_add_item_form_submit(&$form, &$form_state) {
     // If there is no sibling, or the sibling is of a different type,
     // the default 100 will work for either fixed or fluid.
     if ($form_state['sibling'] && $settings['items'][$form_state['sibling']]['width_type'] == $item['width_type']) {
-      // steal half of the sibling's space.
+      // Steal half of the sibling's space.
       $width = $settings['items'][$form_state['sibling']]['width'] / 2;
       $settings['items'][$form_state['sibling']]['width'] = $width;
       $item['width'] = $width;
@@ -1587,8 +1602,9 @@ function panels_flexible_add_item_form_submit(&$form, &$form_state) {
 }
 
 /**
- * AJAX responder to remove an existing row, column or region from a flexible
- * layout.
+ * Panels remove AJAX responder.
+ *
+ * Removes an existing row, column or region from a flexible layout.
  */
 function panels_ajax_flexible_edit_remove($handler, $id) {
   $settings = &$handler->display->layout_settings;
@@ -1602,10 +1618,8 @@ function panels_ajax_flexible_edit_remove($handler, $id) {
   $css_id = isset($handler->display->css_id) ? $handler->display->css_id : '';
   // Create a renderer object so we can render our new stuff.
   $renderer = panels_flexible_create_renderer(TRUE, $css_id, array(), $settings, $handler->display, $handler->plugins['layout'], $handler);
-
-
   $siblings = &$settings['items'][$item['parent']]['children'];
-  $parent_class = '.'  . $renderer->base[$settings['items'][$item['parent']]['type']] . '-' . $item['parent'];
+  $parent_class = '.' . $renderer->base[$settings['items'][$item['parent']]['type']] . '-' . $item['parent'];
 
   // Find the offset of our array. This will also be the key because
   // this is a simple array.
@@ -1627,7 +1641,7 @@ function panels_ajax_flexible_edit_remove($handler, $id) {
         $settings['items'][$next]['width'] += $item['width'];
       }
       // If that failed, try the previous one.
-      else if (isset($prev) && $settings['items'][$prev]['width_type'] == '%') {
+      elseif (isset($prev) && $settings['items'][$prev]['width_type'] == '%') {
         $settings['items'][$prev]['width'] += $item['width'];
       }
     }
@@ -1687,8 +1701,7 @@ function panels_ajax_flexible_edit_remove($handler, $id) {
 }
 
 /**
- * AJAX responder to store resize information when the user adjusts the
- * splitter.
+ * AJAX responder to store resize information when the user adjusts splitter.
  */
 function panels_ajax_flexible_edit_resize($handler) {
   ctools_include('ajax');

sites/all/modules/contrib/panels/panels/plugins/layouts/onecol/onecol.css

@@ -1,4 +1,3 @@
-
 .panel-1col {
 /*  overflow: hidden;  */
 }

sites/all/modules/contrib/panels/panels/plugins/layouts/onecol/onecol.inc

@@ -1,9 +1,10 @@
 <?php
 
 /**
- * implementation of hook_panels_layouts()
+ * @file
+ * Implementation of hook_panels_layouts().
  */
-// Plugin definition
+// Plugin definition.
 $plugin = array(
   'title' => t('Single column'),
   'category' => t('Columns: 1'),

sites/all/modules/contrib/panels/panels/plugins/layouts/onecol/panels-onecol.tpl.php

@@ -12,7 +12,7 @@
  *   $content['middle']: The only panel in the layout.
  */
 ?>
-<div class="panel-display panel-1col clearfix" <?php if (!empty($css_id)) { print "id=\"$css_id\""; } ?>>
+<div class="panel-display panel-1col clearfix" <?php if (!empty($css_id)) {print "id=\"$css_id\"";} ?>>
   <div class="panel-panel panel-col">
     <div><?php print $content['middle']; ?></div>
   </div>

sites/all/modules/contrib/panels/panels/plugins/layouts/threecol_25_50_25/panels-threecol-25-50-25.tpl.php

@@ -14,7 +14,7 @@
  *   - $content['right']: Content in the right column.
  */
 ?>
-<div class="panel-display panel-3col clearfix" <?php if (!empty($css_id)) { print "id=\"$css_id\""; } ?>>
+<div class="panel-display panel-3col clearfix" <?php if (!empty($css_id)) {print "id=\"$css_id\"";} ?>>
   <div class="panel-panel panel-col-first">
     <div class="inside"><?php print $content['left']; ?></div>
   </div>

sites/all/modules/contrib/panels/panels/plugins/layouts/threecol_25_50_25/threecol_25_50_25.css

@@ -1,32 +1,31 @@
-
-.panel-3col { 
+.panel-3col {
 /*  overflow: hidden;  */
 }
 
-.panel-3col .panel-col-first { 
-  float: left; 
-  width: 25%; 
+.panel-3col .panel-col-first {
+  float: left;
+  width: 25%;
 }
 
-.panel-3col .panel-col-first .inside { 
+.panel-3col .panel-col-first .inside {
   margin: 0 .5em 1em 0;
 }
 
-.panel-3col .panel-col { 
-  float: left; 
-  width: 50%; 
+.panel-3col .panel-col {
+  float: left;
+  width: 50%;
 }
 
-.panel-3col .panel-col .inside { 
+.panel-3col .panel-col .inside {
   margin: 0 .5em 1em .5em;
 }
 
-.panel-3col .panel-col-last { 
-  float: left; 
-  width: 25%; 
+.panel-3col .panel-col-last {
+  float: left;
+  width: 25%;
 }
 
-.panel-3col .panel-col-last .inside { 
+.panel-3col .panel-col-last .inside {
   margin: 0 0 1em .5em;
 }
 

sites/all/modules/contrib/panels/panels/plugins/layouts/threecol_25_50_25/threecol_25_50_25.inc

@@ -1,9 +1,10 @@
 <?php
 
 /**
- * implementation of hook_panels_layouts
+ * @file
+ * Implementation of hook_panels_layouts.
  */
-// Plugin definition
+// Plugin definition.
 $plugin = array(
   'title' => t('Three column 25/50/25'),
   'category' => t('Columns: 3'),
@@ -14,7 +15,6 @@ $plugin = array(
   'regions' => array(
     'left' => t('Left side'),
     'middle' => t('Middle column'),
-    'right' => t('Right side')
+    'right' => t('Right side'),
   ),
 );
-

sites/all/modules/contrib/panels/panels/plugins/layouts/threecol_25_50_25_stacked/panels-threecol-25-50-25-stacked.tpl.php

@@ -17,7 +17,7 @@
  *   - $content['bottom']: Content in the bottom row.
  */
 ?>
-<div class="panel-display panel-3col-stacked clearfix" <?php if (!empty($css_id)) { print "id=\"$css_id\""; } ?>>
+<div class="panel-display panel-3col-stacked clearfix" <?php if (!empty($css_id)) {print "id=\"$css_id\"";} ?>>
   <?php if ($content['top']): ?>
     <div class="panel-panel panel-col-top">
       <div class="inside"><?php print $content['top']; ?></div>

sites/all/modules/contrib/panels/panels/plugins/layouts/threecol_25_50_25_stacked/threecol_25_50_25_stacked.css

@@ -1,11 +1,10 @@
-
-.panel-3col-stacked { 
+.panel-3col-stacked {
 /*  overflow: hidden;  */
 }
 
 .panel-3col-stacked .panel-col-top,
-.panel-3col-stacked .panel-col-bottom { 
-  width: 100%; 
+.panel-3col-stacked .panel-col-bottom {
+  width: 100%;
   clear: both;
 }
 
@@ -13,30 +12,30 @@
   margin-bottom: .5em;
 }
 
-.panel-3col-stacked .panel-col-first { 
-  float: left; 
-  width: 25%; 
+.panel-3col-stacked .panel-col-first {
+  float: left;
+  width: 25%;
 }
 
-.panel-3col-stacked .panel-col-first .inside { 
+.panel-3col-stacked .panel-col-first .inside {
   margin: 0 .5em 1em .5em;
 }
 
-.panel-3col-stacked .panel-col { 
-  float: left; 
-  width: 50%; 
+.panel-3col-stacked .panel-col {
+  float: left;
+  width: 50%;
 }
 
-.panel-3col-stacked .panel-col .inside { 
+.panel-3col-stacked .panel-col .inside {
   margin: 0 .5em 1em .5em;
 }
 
-.panel-3col-stacked .panel-col-last { 
-  float: left; 
-  width: 25%; 
+.panel-3col-stacked .panel-col-last {
+  float: left;
+  width: 25%;
 }
 
-.panel-3col-stacked .panel-col-last .inside { 
+.panel-3col-stacked .panel-col-last .inside {
   margin: 0 0 1em .5em;
 }
 

sites/all/modules/contrib/panels/panels/plugins/layouts/threecol_25_50_25_stacked/threecol_25_50_25_stacked.inc

@@ -1,6 +1,9 @@
 <?php
 
-// Plugin definition
+/**
+ * @file
+ * Plugin definition.
+ */
 $plugin = array(
   'title' => t('Three column 25/50/25 stacked'),
   'category' => t('Columns: 3'),

sites/all/modules/contrib/panels/panels/plugins/layouts/threecol_33_34_33/panels-threecol-33-34-33.tpl.php

@@ -16,7 +16,7 @@
  */
 ?>
 
-<div class="panel-display panel-3col-33 clearfix" <?php if (!empty($css_id)) { print "id=\"$css_id\""; } ?>>
+<div class="panel-display panel-3col-33 clearfix" <?php if (!empty($css_id)) {print "id=\"$css_id\"";} ?>>
   <div class="panel-panel panel-col-first">
     <div class="inside"><?php print $content['left']; ?></div>
   </div>

sites/all/modules/contrib/panels/panels/plugins/layouts/threecol_33_34_33/threecol_33_34_33.css

@@ -1,32 +1,31 @@
-
-.panel-3col-33 { 
+.panel-3col-33 {
 /*  overflow: hidden;  */
 }
 
-.panel-3col-33 .panel-col-first { 
-  float: left; 
-  width: 33%; 
+.panel-3col-33 .panel-col-first {
+  float: left;
+  width: 33%;
 }
 
-.panel-3col-33 .panel-col-first .inside { 
+.panel-3col-33 .panel-col-first .inside {
   margin: 0 .5em 1em 0;
 }
 
-.panel-3col-33 .panel-col { 
-  float: left; 
-  width: 33%; 
+.panel-3col-33 .panel-col {
+  float: left;
+  width: 33%;
 }
 
-.panel-3col-33 .panel-col .inside { 
+.panel-3col-33 .panel-col .inside {
   margin: 0 .5em 1em .5em;
 }
 
-.panel-3col-33 .panel-col-last { 
-  float: left; 
-  width: 33%; 
+.panel-3col-33 .panel-col-last {
+  float: left;
+  width: 33%;
 }
 
-.panel-3col-33 .panel-col-last .inside { 
+.panel-3col-33 .panel-col-last .inside {
   margin: 0 0 1em .5em;
 }
 

sites/all/modules/contrib/panels/panels/plugins/layouts/threecol_33_34_33/threecol_33_34_33.inc

@@ -1,6 +1,9 @@
 <?php
 
-// Plugin definition
+/**
+ * @file
+ * Plugin definition.
+ */
 $plugin = array(
   'title' => t('Three column 33/34/33'),
   'category' => t('Columns: 3'),
@@ -10,6 +13,6 @@ $plugin = array(
   'regions' => array(
     'left' => t('Left side'),
     'middle' => t('Middle column'),
-    'right' => t('Right side')
-   ),
+    'right' => t('Right side'),
+  ),
 );

sites/all/modules/contrib/panels/panels/plugins/layouts/threecol_33_34_33_stacked/panels-threecol-33-34-33-stacked.tpl.php

@@ -17,7 +17,7 @@
  *   - $content['bottom']: Content in the bottom row.
  */
 ?>
-<div class="panel-display panel-3col-33-stacked  clearfix" <?php if (!empty($css_id)) { print "id=\"$css_id\""; } ?>>
+<div class="panel-display panel-3col-33-stacked  clearfix" <?php if (!empty($css_id)) {print "id=\"$css_id\"";} ?>>
   <?php if ($content['top']): ?>
     <div class="panel-panel panel-col-top">
       <div class="inside"><?php print $content['top']; ?></div>

sites/all/modules/contrib/panels/panels/plugins/layouts/threecol_33_34_33_stacked/threecol_33_34_33_stacked.css

@@ -1,11 +1,10 @@
-
-.panel-3col-33-stacked { 
+.panel-3col-33-stacked {
 /*  overflow: hidden;  */
 }
 
 .panel-3col-33-stacked .panel-col-top,
-.panel-3col-33-stacked .panel-col-bottom { 
-  width: 100%; 
+.panel-3col-33-stacked .panel-col-bottom {
+  width: 100%;
   clear: both;
 }
 
@@ -13,30 +12,30 @@
   margin-bottom: 1em;
 }
 
-.panel-3col-33-stacked .panel-col-first { 
-  float: left; 
-  width: 33%; 
+.panel-3col-33-stacked .panel-col-first {
+  float: left;
+  width: 33%;
 }
 
-.panel-3col-33-stacked .panel-col-first .inside { 
+.panel-3col-33-stacked .panel-col-first .inside {
   margin: 0 .5em 1em 0;
 }
 
-.panel-3col-33-stacked .panel-col { 
-  float: left; 
-  width: 33%; 
+.panel-3col-33-stacked .panel-col {
+  float: left;
+  width: 33%;
 }
 
-.panel-3col-33-stacked .panel-col .inside { 
+.panel-3col-33-stacked .panel-col .inside {
   margin: 0 .5em 1em .5em;
 }
 
-.panel-3col-33-stacked .panel-col-last { 
-  float: left; 
-  width: 33%; 
+.panel-3col-33-stacked .panel-col-last {
+  float: left;
+  width: 33%;
 }
 
-.panel-3col-33-stacked .panel-col-last .inside { 
+.panel-3col-33-stacked .panel-col-last .inside {
   margin: 0 0 1em .5em;
 }
 

sites/all/modules/contrib/panels/panels/plugins/layouts/threecol_33_34_33_stacked/threecol_33_34_33_stacked.inc

@@ -1,6 +1,9 @@
 <?php
 
-// Plugin definition
+/**
+ * @file
+ * Plugin definition.
+ */
 $plugin = array(
   'title' => t('Three column 33/34/33 stacked'),
   'category' => t('Columns: 3'),
@@ -12,6 +15,6 @@ $plugin = array(
     'left' => t('Left side'),
     'middle' => t('Middle column'),
     'right' => t('Right side'),
-    'bottom' => t('Bottom')
+    'bottom' => t('Bottom'),
   ),
 );

sites/all/modules/contrib/panels/panels/plugins/layouts/twocol/panels-twocol.tpl.php

@@ -14,7 +14,7 @@
  *   - $content['right']: Content in the right column.
  */
 ?>
-<div class="panel-display panel-2col clearfix" <?php if (!empty($css_id)) { print "id=\"$css_id\""; } ?>>
+<div class="panel-display panel-2col clearfix" <?php if (!empty($css_id)) {print "id=\"$css_id\"";} ?>>
   <div class="panel-panel panel-col-first">
     <div class="inside"><?php print $content['left']; ?></div>
   </div>

sites/all/modules/contrib/panels/panels/plugins/layouts/twocol/twocol.css

@@ -1,29 +1,28 @@
-
-.panel-2col { 
+.panel-2col {
 /*  overflow: hidden;  */
 }
 
-.panel-2col .panel-col-first { 
-  float: left; 
-  width: 50%; 
+.panel-2col .panel-col-first {
+  float: left;
+  width: 50%;
 }
 * html .panel-2col .panel-col-first {
   width: 49.9%;
 }
 
-.panel-2col .panel-col-first .inside { 
+.panel-2col .panel-col-first .inside {
   margin: 0 .5em 1em 0;
 }
 
-.panel-2col .panel-col-last { 
-  float: left; 
-  width: 50%; 
+.panel-2col .panel-col-last {
+  float: left;
+  width: 50%;
 }
 * html .panel-2col .panel-col-last {
   width: 49.9%;
 }
 
-.panel-2col .panel-col-last .inside { 
+.panel-2col .panel-col-last .inside {
   margin: 0 0 1em .5em;
 }
 

sites/all/modules/contrib/panels/panels/plugins/layouts/twocol/twocol.inc

@@ -1,6 +1,9 @@
 <?php
 
-// Plugin definition
+/**
+ * @file
+ * Plugin definition.
+ */
 $plugin = array(
   'title' => t('Two column'),
   'category' => t('Columns: 2'),
@@ -9,6 +12,6 @@ $plugin = array(
   'css' => 'twocol.css',
   'regions' => array(
     'left' => t('Left side'),
-    'right' => t('Right side')
+    'right' => t('Right side'),
   ),
 );

sites/all/modules/contrib/panels/panels/plugins/layouts/twocol_bricks/panels-twocol-bricks.tpl.php

@@ -22,7 +22,7 @@
  *   - $content['bottom']: Content in the bottom row.
  */
 ?>
-<div class="panel-display panel-2col-bricks clearfix" <?php if (!empty($css_id)) { print "id=\"$css_id\""; } ?>>
+<div class="panel-display panel-2col-bricks clearfix" <?php if (!empty($css_id)) {print "id=\"$css_id\"";} ?>>
   <div class="panel-panel panel-col-top">
     <div class="inside"><?php print $content['top']; ?></div>
   </div>

sites/all/modules/contrib/panels/panels/plugins/layouts/twocol_bricks/twocol_bricks.css

@@ -1,5 +1,4 @@
-
-.panel-2col-bricks { 
+.panel-2col-bricks {
 /*  overflow: hidden;  */
   margin-top: 0;
   padding-top: 0;
@@ -7,8 +6,8 @@
 
 .panel-2col-bricks .panel-col-top,
 .panel-2col-bricks .panel-col-middle,
-.panel-2col-bricks .panel-col-bottom { 
-  width: 99.9%; 
+.panel-2col-bricks .panel-col-bottom {
+  width: 99.9%;
   clear: both;
 }
 
@@ -17,27 +16,27 @@
   margin-bottom: .5em;
 }
 
-.panel-2col-bricks .panel-col-first { 
-  float: left; 
-  width: 50%; 
+.panel-2col-bricks .panel-col-first {
+  float: left;
+  width: 50%;
 }
 * html .panel-2col-bricks .panel-col-first {
   width: 49.9%;
 }
 
-.panel-2col-bricks .panel-col-first .inside { 
+.panel-2col-bricks .panel-col-first .inside {
   margin: 0 .5em .5em 0;
 }
 
-.panel-2col-bricks .panel-col-last { 
-  float: left; 
-  width: 50%; 
+.panel-2col-bricks .panel-col-last {
+  float: left;
+  width: 50%;
 }
 * html .panel-2col-bricks .panel-col-last {
   width: 49.9%;
 }
 
-.panel-2col-bricks .panel-col-last .inside { 
+.panel-2col-bricks .panel-col-last .inside {
   margin: 0 0 .5em .5em;
 }
 

sites/all/modules/contrib/panels/panels/plugins/layouts/twocol_bricks/twocol_bricks.inc

@@ -2,10 +2,10 @@
 
 /**
  * @file
- * Implementation for the two column bricked layout
+ * Implementation for the two column bricked layout.
  */
 
-// Plugin definition
+// Plugin definition.
 $plugin = array(
   'title' => t('Two column bricks'),
   'category' => t('Columns: 2'),
@@ -22,4 +22,3 @@ $plugin = array(
     'bottom' => t('Bottom'),
   ),
 );
-

sites/all/modules/contrib/panels/panels/plugins/layouts/twocol_stacked/panels-twocol-stacked.tpl.php

@@ -16,7 +16,7 @@
  *   - $content['bottom']: Content in the bottom row.
  */
 ?>
-<div class="panel-2col-stacked clearfix panel-display" <?php if (!empty($css_id)) { print "id=\"$css_id\""; } ?>>
+<div class="panel-2col-stacked clearfix panel-display" <?php if (!empty($css_id)) {print "id=\"$css_id\"";} ?>>
   <?php if ($content['top']): ?>
     <div class="panel-col-top panel-panel">
       <div class="inside"><?php print $content['top']; ?></div>

sites/all/modules/contrib/panels/panels/plugins/layouts/twocol_stacked/twocol_stacked.css

@@ -1,13 +1,12 @@
-
-.panel-2col-stacked { 
+.panel-2col-stacked {
 /*  overflow: hidden;  */
   margin-top: 0;
   padding-top: 0;
 }
 
 .panel-2col-stacked .panel-col-top,
-.panel-2col-stacked .panel-col-bottom { 
-  width: 99.9%; 
+.panel-2col-stacked .panel-col-bottom {
+  width: 99.9%;
   clear: both;
 }
 
@@ -15,24 +14,24 @@
   margin-bottom: .5em;
 }
 
-.panel-2col-stacked .panel-col-first { 
-  float: left; 
-  width: 50%; 
+.panel-2col-stacked .panel-col-first {
+  float: left;
+  width: 50%;
 }
 * html .panel-2col-stacked .panel-col-first {
   width: 49.9%;
 }
 
-.panel-2col-stacked .panel-col-first .inside { 
+.panel-2col-stacked .panel-col-first .inside {
   margin: 0 .5em 1em 0;
 }
 
-.panel-2col-stacked .panel-col-last { 
-  float: left; 
-  width: 49.9%; 
+.panel-2col-stacked .panel-col-last {
+  float: left;
+  width: 49.9%;
 }
 
-.panel-2col-stacked .panel-col-last .inside { 
+.panel-2col-stacked .panel-col-last .inside {
   margin: 0 0 1em .5em;
 }
 

sites/all/modules/contrib/panels/panels/plugins/layouts/twocol_stacked/twocol_stacked.inc

@@ -1,6 +1,9 @@
 <?php
 
-// Plugin definition
+/**
+ * @file
+ * Plugin definition.
+ */
 $plugin = array(
   'title' => t('Two column stacked'),
   'category' => t('Columns: 2'),
@@ -11,6 +14,6 @@ $plugin = array(
     'top' => t('Top'),
     'left' => t('Left side'),
     'right' => t('Right side'),
-    'bottom' => t('Bottom')
+    'bottom' => t('Bottom'),
   ),
 );

sites/all/modules/contrib/panels/panels/plugins/page_wizards/landing_page.inc

@@ -103,7 +103,7 @@ function panels_landing_page_basic($form, &$form_state) {
     '#default_value' => $cache->admin_description,
   );
 
-  // path
+  // Path.
   $form['path'] = array(
     '#type' => 'textfield',
     '#title' => t('Path'),
@@ -136,7 +136,7 @@ function panels_landing_page_basic($form, &$form_state) {
       '#options' => menu_get_menus(),
       '#default_value' => $cache->menu['name'],
       '#process' => array('ctools_dependent_process'),
-    '#dependency' => array('edit-menu-entry' => array(1)),
+      '#dependency' => array('edit-menu-entry' => array(1)),
     );
   }
   else {
@@ -185,7 +185,7 @@ function panels_landing_page_basic_validate(&$form, &$form_state) {
     form_error($form['path'], t('%, !, ?, #, or & cannot appear in the path.'));
   }
 
-  // Check to see if something is already using the path
+  // Check to see if something is already using the path.
   $result = db_query("SELECT * FROM {menu_router} WHERE path = :path", array(':path' => $form_state['values']['path']))->fetch();
   if ($result) {
     form_error($form['path'], t('That path is already in use. This system cannot override existing paths.'));
@@ -256,7 +256,7 @@ function panels_landing_page_finish(&$form_state) {
   $subtask->path = $cache->path;
   $subtask->menu = $cache->menu;
 
-  // Create the the panel context variant configured with our display
+  // Create the the panel context variant configured with our display.
   $plugin = page_manager_get_task_handler('panel_context');
 
   // Set the storage id.
@@ -274,7 +274,7 @@ function panels_landing_page_finish(&$form_state) {
   page_manager_page_new_page_cache($subtask, $page);
   page_manager_handler_add_to_page($page, $handler);
 
-  // Save it
+  // Save it.
   page_manager_save_page_cache($page);
 
   // Send us to the new page immediately.

sites/all/modules/contrib/panels/panels/plugins/panels_storage/page_manager.inc

@@ -5,7 +5,7 @@
  * Provides a panels_storage plugin for page_manager.
  */
 
-// Plugin definition
+// Plugin definition.
 $plugin = array(
   'access callback' => 'page_manager_panels_storage_access',
 );

sites/all/modules/contrib/panels/panels/plugins/panels_storage/panels_layouts_ui.inc

@@ -0,0 +1,18 @@
+<?php
+
+/**
+ * @file
+ * Provides a panels_storage plugin for the reusable flexible layouts UI.
+ */
+
+// Plugin definition.
+$plugin = array(
+  'access callback' => 'panels_layouts_ui_panels_storage_access',
+);
+
+/**
+ * Access callback for panels storage.
+ */
+function panels_layouts_ui_panels_storage_access($storage_type, $storage_id, $op, $account) {
+  return user_access('administer panels layouts', $account);
+}

sites/all/modules/contrib/panels/panels/plugins/style_bases/pane/pane_plain_box/pane-plain-box.css

@@ -8,4 +8,3 @@
   color: %header-text;
   background-color: %header-background;
 }
-

sites/all/modules/contrib/panels/panels/plugins/style_bases/pane/pane_rounded_shadow/pane-rounded-shadow.css

@@ -1,12 +1,16 @@
 /* Show only to IE7 */
 *:first-child+html .rounded-shadow-background,
 /* Show only to IE6 */
-* html .rounded-shadow-background  {
+* html .rounded-shadow-background {
   margin: 0 -10px 0 0 !important;
   padding: 10px 0 5px 0 !important;
 }
 
-.rounded-shadow-top-edge, .rounded-shadow-bottom-edge, .rounded-shadow-left-edge, .rounded-shadow-right-edge, .rounded-shadow-wrap-corner {
+.rounded-shadow-top-edge,
+.rounded-shadow-bottom-edge,
+.rounded-shadow-left-edge,
+.rounded-shadow-right-edge,
+.rounded-shadow-wrap-corner {
   position: relative;
   /* hasLayout -1 ? For IE only */
   zoom: 1;
@@ -88,7 +92,8 @@
 }
 
 %style .panel-pane {
-  position: relative; top: -6px;
+  position: relative;
+  top: -6px;
 }
 
 /*

sites/all/modules/contrib/panels/panels/plugins/style_bases/pane/pane_rounded_shadow/pane_rounded_shadow.inc

@@ -96,4 +96,3 @@ function panels_pane_rounded_shadow_style_base_build($plugin, $settings, &$css,
   ctools_stylizer_font_apply_style($css, '%style .pane-content', $settings['text_font']);
   ctools_stylizer_padding_apply_style($css, '%style', $settings['padding']);
 }
-

sites/all/modules/contrib/panels/panels/plugins/style_bases/region/region_rounded_shadow/region-rounded-shadow.css

@@ -1,12 +1,16 @@
 /* Show only to IE7 */
 *:first-child+html .rounded-shadow-background,
 /* Show only to IE6 */
-* html .rounded-shadow-background  {
+* html .rounded-shadow-background {
   margin: 0 -10px 0 0 !important;
   padding: 10px 0 5px 0 !important;
 }
 
-.rounded-shadow-top-edge, .rounded-shadow-bottom-edge, .rounded-shadow-left-edge, .rounded-shadow-right-edge, .rounded-shadow-wrap-corner {
+.rounded-shadow-top-edge,
+.rounded-shadow-bottom-edge,
+.rounded-shadow-left-edge,
+.rounded-shadow-right-edge,
+.rounded-shadow-wrap-corner {
   position: relative;
   /* hasLayout -1 ? For IE only */
   zoom: 1;

sites/all/modules/contrib/panels/panels/plugins/style_bases/region/region_rounded_shadow/region_rounded_shadow.inc

@@ -68,4 +68,3 @@ function panels_region_rounded_shadow_style_base_build($plugin, $settings, &$css
   ctools_stylizer_font_apply_style($css, '%style', $settings['font']);
   ctools_stylizer_padding_apply_style($css, '%style', $settings['padding']);
 }
-

sites/all/modules/contrib/panels/panels/plugins/styles/block.inc

@@ -5,7 +5,7 @@
  * Definition of the 'block' panel style.
  */
 
-// Plugin definition
+// Plugin definition.
 $plugin = array(
   'title' => t('System block'),
   'description' => t('Display the pane as a system block; this is more restrictive than the default.'),
@@ -56,4 +56,3 @@ function theme_panels_block_style_render_pane($vars) {
   // might want to utilize.
   return drupal_render($build);
 }
-

sites/all/modules/contrib/panels/panels/plugins/styles/corners/rounded_corners.inc

@@ -5,7 +5,7 @@
  * Definition of the 'rounded_corners' panel style.
  */
 
-// Plugin definition
+// Plugin definition.
 $plugin = array(
   'title' => t('Rounded corners'),
   'description' => t('Presents the panes or panels with a rounded corner box around them'),

sites/all/modules/contrib/panels/panels/plugins/styles/default.inc

@@ -5,7 +5,7 @@
  * Definition of the 'default' panel style.
  */
 
-// Plugin definition
+// Plugin definition.
 $plugin = array(
   'title' => t('No style'),
   'description' => t('The default panel rendering style; displays each pane with a separator.'),
@@ -24,4 +24,3 @@ function theme_panels_default_style_render_region($vars) {
 //  $output .= '</div>';
   return $output;
 }
-

sites/all/modules/contrib/panels/panels/plugins/styles/list.inc

@@ -6,7 +6,7 @@
  * Definition of the 'list' panel style.
  */
 
-// Plugin definition
+// Plugin definition.
 $plugin = array(
   'title' => t('List'),
   'description' => t('Presents the panes in the form of an HTML list.'),
@@ -55,4 +55,3 @@ function panels_list_style_settings_form($style_settings) {
 
   return $form;
 }
-

sites/all/modules/contrib/panels/panels/plugins/styles/naked.inc

@@ -5,7 +5,7 @@
  * Definition of the 'naked' panel style.
  */
 
-// Plugin definition
+// Plugin definition.
 $plugin = array(
   'title' => t('No markup at all'),
   'description' => t('Display the pane or region with no markup, not even a title.'),
@@ -31,4 +31,3 @@ function theme_panels_naked_style_render_region($vars) {
 function theme_panels_naked_style_render_pane($vars) {
   return render($vars['content']->content);
 }
-

sites/all/modules/contrib/panels/panels/plugins/styles/stylizer.inc

@@ -6,7 +6,7 @@
  */
 
 if (module_exists('stylizer')) {
-  // Plugin definition
+  // Plugin definition.
   $plugin = array(
     'title' => t('Custom style'),
     'weight' => -10,
@@ -22,7 +22,7 @@ if (module_exists('stylizer')) {
     'get child' => 'panels_stylizer_get_substyle',
     'get children' => 'panels_stylizer_get_substyles',
 
-    // Set up an AJAX callback for the style
+    // Set up an AJAX callback for the style.
     'ajax' => array(
       'custom' => 'panels_stylizer_pane_add_style',
     ),
@@ -140,13 +140,13 @@ function theme_panels_stylizer_stylizer_style_render_region($vars) {
     return theme($plugin['theme'], array('settings' => $settings, 'class' => ctools_stylizer_get_css_class($plugin, $settings), 'content' => $output));
   }
   else {
-    // if the style is gone, just display the output.
+    // If the style is gone, just display the output.
     return $output;
   }
 }
 
 /**
- * Pane render theme
+ * Pane render theme.
  */
 function theme_panels_stylizer_stylizer_style_render_pane($vars) {
   $content = $vars['content'];
@@ -174,7 +174,7 @@ function theme_panels_stylizer_stylizer_style_render_pane($vars) {
     }
   }
 
-  // if the style is gone or has no theme of its own, just display the output.
+  // If the style is gone or has no theme of its own, just display the output.
   return theme('panels_pane', array('content' => $content, 'pane' => $pane, 'display' => $display));
 }
 
@@ -257,7 +257,7 @@ function panels_stylizer_pane_add_style(&$renderer, $plugin, &$conf, $type, $pid
     if ($type == 'pane') {
       $renderer->command_update_pane($pid);
     }
-    else if ($type == 'region') {
+    elseif ($type == 'region') {
       $renderer->command_update_region_links($pid);
     }
     else {
@@ -308,7 +308,7 @@ function panels_stylizer_edit_pane_style_form(&$form, &$form_state) {
     '#dependency' => array('edit-preconfigured' => array(1)),
   );
 
-  // Add the checkbox, set the weight early
+  // Add the checkbox, set the weight early.
   $form['panels']['preconfigured'] = array(
     '#type' => 'checkbox',
     '#title' => t('Make this style available to other regions or panes'),
@@ -365,7 +365,7 @@ function panels_stylizer_edit_pane_style_form_submit(&$form, &$form_state) {
     $form_state['owner info']['owner settings']['admin_title'] = $form_state['values']['admin_title'];
     $form_state['owner info']['owner settings']['admin_description'] = $form_state['values']['admin_description'];
 
-    // Clean up preview files before we set the name
+    // Clean up preview files before we set the name.
     ctools_stylizer_cleanup_style($form_state['plugin'], $form_state['settings']);
 
     $form_state['settings']['name'] = $form_state['values']['name'];

sites/all/modules/contrib/panels/panels/plugins/task_handlers/panel_context.inc

@@ -2,22 +2,21 @@
 
 /**
  * @file
- *
  * This is the task handler plugin to handle attaching a panel to any
  * task that advertises itself as a 'context' type, which all of the
  * basic page tasks provided by page_manager.module do by default.
  */
 
-// Plugin definition
+// Plugin definition.
 $plugin = array(
-  // is a 'context' handler type, meaning it supports the API of the
+  // Is a 'context' handler type, meaning it supports the API of the
   // context handlers provided by ctools context plugins.
   'handler type' => 'context',
   'visible' => TRUE, // may be added up front.
 
   // Administrative fields.
   'title' => t('Panel'),
-  'admin summary' =>'panels_panel_context_admin_summary',
+  'admin summary' => 'panels_panel_context_admin_summary',
   'admin title' => 'panels_panel_context_title',
   'operations' => array(
     'settings' => array(
@@ -115,7 +114,7 @@ $plugin = array(
 
   // Callback to render the data.
   'render' => 'panels_panel_context_render',
-  // Callback to return addressable data
+  // Callback to return addressable data.
   'addressable callback' => 'panels_panel_context_get_addressable',
 
   // Various callbacks for operations performed on the handler to ensure
@@ -216,7 +215,7 @@ function panels_panel_context_tab_operation($handler, $contexts, $args) {
  *   simply means that the display has been modified and is awaiting
  *   save. The modified one should always be used for editing purposes.
  * - If none of the above is true, then a new display needs to be created
- *   for the handler and pla
+ *   for the handler and pla.
  */
 function &panels_panel_context_get_display(&$handler) {
   if (!isset($handler->conf['display'])) {
@@ -269,7 +268,7 @@ function panels_panel_context_render($handler, $base_contexts, $args, $test = TR
   ctools_include('context-task-handler');
   ctools_include('plugins', 'panels');
 
-  // Add my contexts
+  // Add my contexts.
   $contexts = ctools_context_handler_get_handler_contexts($base_contexts, $handler);
 
   // Test.
@@ -281,7 +280,7 @@ function panels_panel_context_render($handler, $base_contexts, $args, $test = TR
     ctools_context_handler_pre_render($handler, $contexts, $args);
   }
 
-  // Load the display
+  // Load the display.
   $display = panels_panel_context_get_display($handler);
 
   $display->context = $contexts;
@@ -298,7 +297,7 @@ function panels_panel_context_render($handler, $base_contexts, $args, $test = TR
     $css_id = 'panel_context:' . $handler->name;
     $filename = ctools_css_retrieve($css_id);
     if (!$filename) {
-      // Add keywords from context
+      // Add keywords from context.
       $css = ctools_context_keyword_substitute($handler->conf['css'], array(), $contexts, array('css safe' => TRUE));
       $filename = ctools_css_store($css_id, $css);
     }
@@ -311,13 +310,12 @@ function panels_panel_context_render($handler, $base_contexts, $args, $test = TR
   $renderer = panels_get_renderer($handler->conf['pipeline'], $display);
   // If the IPE is enabled, but the user does not have access to edit
   // load the standard renderer instead.
-
   $parents = class_parents($renderer);
   if (!empty($parents['panels_renderer_editor']) && !user_access('user page manager') && !user_access('use ipe with page manager')) {
     $renderer = panels_get_renderer_handler('standard', $display);
   }
 
-  // Remove and add body element classes
+  // Remove and add body element classes.
   $panel_body_css = &drupal_static('panel_body_css');
 
   if (isset($handler->conf['body_classes_to_remove'])) {
@@ -325,17 +323,17 @@ function panels_panel_context_render($handler, $base_contexts, $args, $test = TR
     if (!isset($panel_body_css['body_classes_to_remove'])) {
       $panel_body_css['body_classes_to_remove'] = check_plain($classes);
     }
-    else{
+    else {
       $panel_body_css['body_classes_to_remove'] .= ' ' . check_plain($classes);
     }
   }
   if (isset($handler->conf['body_classes_to_add'])) {
     $classes = ctools_context_keyword_substitute($handler->conf['body_classes_to_add'], array(), $contexts, array('css safe' => TRUE));
     if (!isset($panel_body_css['body_classes_to_add'])) {
-    $panel_body_css['body_classes_to_add'] = check_plain($classes);
+      $panel_body_css['body_classes_to_add'] = check_plain($classes);
     }
     else {
-      $panel_body_css['body_classes_to_add'] .= ' '. check_plain($classes);
+      $panel_body_css['body_classes_to_add'] .= ' ' . check_plain($classes);
     }
   }
 
@@ -399,7 +397,7 @@ function panels_panel_context_export(&$handler, $indent) {
 /**
  * When a handler is cloned, we have to clone the display.
  */
-  function panels_panel_context_clone(&$handler) {
+function panels_panel_context_clone(&$handler) {
   $old_display = panels_panel_context_get_display($handler);
   $code = panels_export_display($old_display);
   eval($code);
@@ -454,7 +452,7 @@ function panels_panel_context_admin_summary($handler, $task, $subtask, $page, $s
   ctools_include('context');
   ctools_include('context-task-handler');
 
-  // Get the operations
+  // Get the operations.
   $operations = page_manager_get_operations($page);
 
   // Get operations for just this handler.
@@ -529,7 +527,7 @@ function panels_panel_context_admin_summary($handler, $task, $subtask, $page, $s
 
   $output .= '<div class="clearfix">';
   if ($show_title) {
-  $output .= '<div class="handler-title clearfix">';
+    $output .= '<div class="handler-title clearfix">';
     $output .= '<div class="actions handler-actions">' . $rendered_operations['actions'] . '</div>';
     $output .= '<span class="title-label">' . $title . '</span>';
   }
@@ -537,24 +535,23 @@ function panels_panel_context_admin_summary($handler, $task, $subtask, $page, $s
   $output .= '</div>';
   $output .= $info;
   $output .= '</div>';
-/*
+  /*
   $output .= '<div class="right-container">';
   $output .= '<h3 class="context-title">' . t('Contexts') . $context_link . '</h3>';
   $output .= $contexts;
   $output .= '</div>';
 
   $output .= '<div class="left-container">';
-//  $output .= $icon;
+  //  $output .= $icon;
   $output .= '<h3 class="handler-title">' . t('Content') . $content_link . '</h3>';
   $output .= $content;
   $output .= '</div>';
-*/
+   */
   return $output;
 }
 
 // --------------------------------------------------------------------------
-// Forms
-
+// Forms.
 /**
  * General notes about forms: The handler is automatically cached by the form
  * wizard, so anything we store on $form_state['handler'] anywhere will get
@@ -689,10 +686,9 @@ function panels_panel_context_edit_move($form, &$form_state) {
   $form = panels_change_layout($form, $form_state);
 
   // Change the 'back' button to just go directly to the previous form
-//  $task_id = $form_state['task']['name'];
-//  $handler_id = $form_state['handler']->handler;
-//  $name = $form_state['handler']->name;
-
+  //  $task_id = $form_state['task']['name'];
+  //  $handler_id = $form_state['handler']->handler;
+  //  $name = $form_state['handler']->name;
   // This form is outside the normal wizard list, so we need to specify the
   // previous/next forms.
   $form['buttons']['previous']['#next'] = 'layout';
@@ -750,7 +746,7 @@ function panels_panel_context_edit_content_submit(&$form, &$form_state) {
   panels_edit_display_form_submit($form, $form_state);
   $handler = &$form_state['handler'];
 
-  // update the cached display:
+  // Update the cached display:
   $display = $form_state['page']->display_cache[$form_state['handler_id']]->display;
   $handler->conf['display'] = $display;
   unset($form_state['page']->display_cache[$form_state['handler_id']]);
@@ -761,7 +757,7 @@ function panels_panel_context_edit_content_submit(&$form, &$form_state) {
 }
 
 /**
- * General settings for the panel
+ * General settings for the panel.
  */
 function panels_panel_context_edit_settings($form, &$form_state) {
   $conf = $form_state['handler']->conf;
@@ -874,7 +870,7 @@ function panels_panel_context_edit_preview($form, &$form_state) {
   $form['preview'] = array();
   ctools_context_replace_form($form['preview'], $contexts);
 
-  // automatically preview if there are no argument placeholders.
+  // Automatically preview if there are no argument placeholders.
   if (empty($form['preview'])) {
     $display = panels_panel_context_get_display($form_state['handler']);
     $display->context = $contexts;
@@ -913,7 +909,7 @@ function panels_panel_context_edit_preview_submit(&$form, &$form_state) {
 }
 
 function panels_panel_context_get_addressable($task, $subtask_name, $handler, $address, $contexts, $arguments, $type) {
-  // Load the display
+  // Load the display.
   $display = panels_panel_context_get_display($handler);
 
   $display->context = $contexts;

sites/all/modules/contrib/panels/panels/plugins/views/panels.views.inc

@@ -1,7 +1,11 @@
 <?php
 
 /**
- * Implementation of hook_views_plugins
+ * @file
+ */
+
+/**
+ * Implementation of hook_views_plugins.
  */
 function panels_views_plugins() {
   $plugins = array(

sites/all/modules/contrib/panels/panels/plugins/views/panels_views_plugin_row_fields.inc

@@ -5,7 +5,7 @@
  */
 
 /**
- * The basic 'fields' row plugin
+ * The basic 'fields' row plugin.
  *
  * This displays fields one after another, giving options for inline
  * or not.
@@ -89,7 +89,8 @@ class panels_views_plugin_row_fields extends views_plugin_row_fields {
     if (!$layout) {
       // Fall back to normal behavior if the layout is somehow invalid. This
       // can happen if the layout was removed, for example.
-      return theme($this->theme_functions(), array('view' => view, 'options' => $this->options, 'row' => $row, 'field_alias' => $this->field_alias));
+      return theme($this->theme_functions(), array('view' => $this->view, 'options' => $this->options, 'row' => $row));
+
     }
 
     // Store a backup copy of the array because we're going to be screwing
@@ -148,10 +149,11 @@ class panels_views_plugin_row_fields extends views_plugin_row_fields {
     // Now that we have a rendered content array, render it.
     return panels_print_layout($layout, $content, $meta);
   }
+
 }
 
 /**
- * Override handler for views_ui_edit_display_form
+ * Override handler for views_ui_edit_display_form.
  */
 function panels_change_layout_button($form, &$form_state) {
   $display = &$form_state['view']->display[$form_state['display_id']];

sites/all/modules/contrib/panels/panels/templates/panels-dashboard-block.tpl.php

@@ -1,4 +1,8 @@
 <?php
+
+/**
+ * @file
+ */
 ?>
 <div class="dashboard-block">
   <h3 class="dashboard-title"><?php print $block['title']; ?></h3>

sites/all/modules/contrib/panels/panels/templates/panels-dashboard-link.tpl.php

@@ -1,4 +1,8 @@
 <?php
+
+/**
+ * @file
+ */
 ?>
 <div class="dashboard-entry clearfix">
   <div class="dashboard-text">

sites/all/modules/contrib/panels/panels/templates/panels-dashboard.tpl.php

@@ -1,4 +1,8 @@
 <?php
+
+/**
+ * @file
+ */
 ?>
 <div class="panels-dashboard clearfix">
   <div class="dashboard-left clearfix">

sites/all/modules/contrib/panels/panels/templates/panels-pane.tpl.php

@@ -1,7 +1,7 @@
 <?php
 /**
- * @file panels-pane.tpl.php
- * Main panel pane template
+ * @file Panels-pane.tpl.php
+ * Main panel pane template.
  *
  * Variables available:
  * - $pane->type: the content type inside this pane

sites/all/modules/contrib/panels/panels_extra_styles/LICENSE.txt

@@ -0,0 +1,339 @@
+                    GNU GENERAL PUBLIC LICENSE
+                       Version 2, June 1991
+
+ Copyright (C) 1989, 1991 Free Software Foundation, Inc.,
+ 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+                            Preamble
+
+  The licenses for most software are designed to take away your
+freedom to share and change it.  By contrast, the GNU General Public
+License is intended to guarantee your freedom to share and change free
+software--to make sure the software is free for all its users.  This
+General Public License applies to most of the Free Software
+Foundation's software and to any other program whose authors commit to
+using it.  (Some other Free Software Foundation software is covered by
+the GNU Lesser General Public License instead.)  You can apply it to
+your programs, too.
+
+  When we speak of free software, we are referring to freedom, not
+price.  Our General Public Licenses are designed to make sure that you
+have the freedom to distribute copies of free software (and charge for
+this service if you wish), that you receive source code or can get it
+if you want it, that you can change the software or use pieces of it
+in new free programs; and that you know you can do these things.
+
+  To protect your rights, we need to make restrictions that forbid
+anyone to deny you these rights or to ask you to surrender the rights.
+These restrictions translate to certain responsibilities for you if you
+distribute copies of the software, or if you modify it.
+
+  For example, if you distribute copies of such a program, whether
+gratis or for a fee, you must give the recipients all the rights that
+you have.  You must make sure that they, too, receive or can get the
+source code.  And you must show them these terms so they know their
+rights.
+
+  We protect your rights with two steps: (1) copyright the software, and
+(2) offer you this license which gives you legal permission to copy,
+distribute and/or modify the software.
+
+  Also, for each author's protection and ours, we want to make certain
+that everyone understands that there is no warranty for this free
+software.  If the software is modified by someone else and passed on, we
+want its recipients to know that what they have is not the original, so
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+
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+patent must be licensed for everyone's free use or not licensed at all.
+
+  The precise terms and conditions for copying, distribution and
+modification follow.
+
+                    GNU GENERAL PUBLIC LICENSE
+   TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
+
+  0. This License applies to any program or other work which contains
+a notice placed by the copyright holder saying it may be distributed
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+
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+  4. You may not copy, modify, sublicense, or distribute the Program
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+
+  5. You are not required to accept this License, since you have not
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+  6. Each time you redistribute the Program (or any work based on the
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+
+  7. If, as a consequence of a court judgment or allegation of patent
+infringement or for any other reason (not limited to patent issues),
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+
+If any portion of this section is held invalid or unenforceable under
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+
+This section is intended to make thoroughly clear what is believed to
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+
+  8. If the distribution and/or use of the Program is restricted in
+certain countries either by patents or by copyrighted interfaces, the
+original copyright holder who places the Program under this License
+may add an explicit geographical distribution limitation excluding
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+the limitation as if written in the body of this License.
+
+  9. The Free Software Foundation may publish revised and/or new versions
+of the General Public License from time to time.  Such new versions will
+be similar in spirit to the present version, but may differ in detail to
+address new problems or concerns.
+
+Each version is given a distinguishing version number.  If the Program
+specifies a version number of this License which applies to it and "any
+later version", you have the option of following the terms and conditions
+either of that version or of any later version published by the Free
+Software Foundation.  If the Program does not specify a version number of
+this License, you may choose any version ever published by the Free Software
+Foundation.
+
+  10. If you wish to incorporate parts of the Program into other free
+programs whose distribution conditions are different, write to the author
+to ask for permission.  For software which is copyrighted by the Free
+Software Foundation, write to the Free Software Foundation; we sometimes
+make exceptions for this.  Our decision will be guided by the two goals
+of preserving the free status of all derivatives of our free software and
+of promoting the sharing and reuse of software generally.
+
+                            NO WARRANTY
+
+  11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY
+FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW.  EXCEPT WHEN
+OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES
+PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED
+OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.  THE ENTIRE RISK AS
+TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU.  SHOULD THE
+PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING,
+REPAIR OR CORRECTION.
+
+  12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
+WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR
+REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,
+INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING
+OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED
+TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY
+YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER
+PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE
+POSSIBILITY OF SUCH DAMAGES.
+
+                     END OF TERMS AND CONDITIONS
+
+            How to Apply These Terms to Your New Programs
+
+  If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
+  To do so, attach the following notices to the program.  It is safest
+to attach them to the start of each source file to most effectively
+convey the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
+    <one line to give the program's name and a brief idea of what it does.>
+    Copyright (C) <year>  <name of author>
+
+    This program is free software; you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation; either version 2 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License along
+    with this program; if not, write to the Free Software Foundation, Inc.,
+    51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+
+Also add information on how to contact you by electronic and paper mail.
+
+If the program is interactive, make it output a short notice like this
+when it starts in an interactive mode:
+
+    Gnomovision version 69, Copyright (C) year name of author
+    Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+    This is free software, and you are welcome to redistribute it
+    under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License.  Of course, the commands you use may
+be called something other than `show w' and `show c'; they could even be
+mouse-clicks or menu items--whatever suits your program.
+
+You should also get your employer (if you work as a programmer) or your
+school, if any, to sign a "copyright disclaimer" for the program, if
+necessary.  Here is a sample; alter the names:
+
+  Yoyodyne, Inc., hereby disclaims all copyright interest in the program
+  `Gnomovision' (which makes passes at compilers) written by James Hacker.
+
+  <signature of Ty Coon>, 1 April 1989
+  Ty Coon, President of Vice
+
+This General Public License does not permit incorporating your program into
+proprietary programs.  If your program is a subroutine library, you may
+consider it more useful to permit linking proprietary applications with the
+library.  If this is what you want to do, use the GNU Lesser General
+Public License instead of this License.